View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_32 (Length: 307)

Name: NF19934_low_32
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_32
NF19934_low_32
[»] chr2 (3 HSPs)
chr2 (106-231)||(11387172-11387298)
chr2 (106-182)||(23828301-23828377)
chr2 (108-200)||(28267704-28267795)
[»] chr3 (3 HSPs)
chr3 (228-293)||(23425349-23425414)
chr3 (109-200)||(9104173-9104264)
chr3 (109-197)||(5004883-5004971)
[»] chr6 (2 HSPs)
chr6 (228-293)||(24893073-24893138)
chr6 (228-293)||(24989899-24989964)
[»] scaffold0006 (2 HSPs)
scaffold0006 (20-136)||(200665-200780)
scaffold0006 (18-102)||(89678-89762)
[»] chr7 (3 HSPs)
chr7 (228-293)||(23207103-23207168)
chr7 (109-214)||(12196712-12196817)
chr7 (40-102)||(21823712-21823773)
[»] chr1 (2 HSPs)
chr1 (110-182)||(24056217-24056289)
chr1 (104-182)||(24275564-24275642)
[»] scaffold0002 (1 HSPs)
scaffold0002 (106-182)||(356887-356963)
[»] chr5 (1 HSPs)
chr5 (112-210)||(6308625-6308723)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 11387172 - 11387298
Alignment:
Q  106 tctaaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaaaaataatt 205  Q
    |||| |||||| |||||||  ||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  11387172 tctagggtaagagtttttttcccatacgttcttactaaatattaggaccgtgttatgaaatagtagtagaaactcttatcttttgaaaggaaaaataatt 11387271  T
Q  206 -taaatgtataattaagagataacttt 231  Q
      |||  |||||||||||| |||||||    
T  11387272 aaaaaaatataattaagaggtaacttt 11387298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 23828377 - 23828301
Alignment:
Q  106 tctaaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactctt 182  Q
    |||||||||||| ||||||  ||| | |||||| |||| |  |||||| ||||||||||||||| ||||||| ||||    
T  23828377 tctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattctt 23828301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 28267795 - 28267704
Alignment:
Q  108 taaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaaaaa 200  Q
    |||||||||||||||||| ||||| || | | |||| ||||||||   |||| |||| ||| |||| ||| |||||| |||||||||||||||    
T  28267795 taaggtaagggttttttc-ccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaagaaaaa 28267704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 23425349 - 23425414
Alignment:
Q  228 ctttctgctaaatatacaacaggacctaacgtccttcaagcgaaagcttccggcagcaattcacct 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  23425349 ctttctgctaaatatacaacagggcctaacgtccttcaagcgaaagcttccggcaacaattcacct 23425414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 9104173 - 9104264
Alignment:
Q  109 aaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaaaaa 200  Q
    ||||||||||||||||| ||||| ||| || |||| |  ||||||  |||||| ||||||| |||| || |||| | |||||||||||||||    
T  9104173 aaggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaaaaa 9104264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 5004971 - 5004883
Alignment:
Q  109 aaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaa 197  Q
    |||||||||| |||||| ||||| |||||| |||| ||||||||   ||||||||| |||  ||||| | |||| | ||||||||||||    
T  5004971 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaa 5004883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 24893138 - 24893073
Alignment:
Q  228 ctttctgctaaatatacaacaggacctaacgtccttcaagcgaaagcttccggcagcaattcacct 293  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  24893138 ctttctgctaaatatacaacagggcctaacgtctttcaagcgaaagcttccggcaacaattcacct 24893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 24989964 - 24989899
Alignment:
Q  228 ctttctgctaaatatacaacaggacctaacgtccttcaagcgaaagcttccggcagcaattcacct 293  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| | || |||||||    
T  24989964 ctttctgctaaatattcaacagggcctaatgtccttcaagcgaaagcttccggtaacagttcacct 24989899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 200780 - 200665
Alignment:
Q  20 ccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagtaaagtcatctaaggtaagggt 119  Q
    ||||||||||| ||||||  || |||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| | ||| || | |||||||||||    
T  200780 ccttttcttagccaatttcaaactatagacgtagctgagcagataccgagttgtggattgaaagtctttgttagaaaatgaag-cacccaaggtaagggt 200682  T
Q  120 tttttctccataggttc 136  Q
    |||||| ||||| ||||    
T  200681 tttttccccatacgttc 200665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 89678 - 89762
Alignment:
Q  18 atccttttcttaggcaatttataagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagtaaag 102  Q
    ||||||||||| | || |||  || ||||||| |||||||| ||||||||| ||||||| | | ||||||||||| ||| |||||    
T  89678 atccttttcttggccattttcaaactatagacatagcagagaagataccggcttgtggactaagagtctttgttagaaattaaag 89762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 23207168 - 23207103
Alignment:
Q  228 ctttctgctaaatatacaacaggacctaacgtccttcaagcgaaagcttccggcagcaattcacct 293  Q
    ||||||||||||||||||||||| |||||||||||||||||||| | |||||||| || |||||||    
T  23207168 ctttctgctaaatatacaacagggcctaacgtccttcaagcgaaggtttccggcaacagttcacct 23207103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 214
Target Start/End: Complemental strand, 12196817 - 12196712
Alignment:
Q  109 aaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaaaaataatttaa 208  Q
    |||||||||| |||||| |||||  ||||| |||| | | |||||  |||||| ||||||| |||| || |||| | |||| ||||||||||||||| ||    
T  12196817 aaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaaaaataattaaa 12196718  T
Q  209 atgtat 214  Q
    ||||||    
T  12196717 atgtat 12196712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 21823773 - 21823712
Alignment:
Q  40 aagtatagacgtagcagagcagataccggtttgtggattgaaagtctttgttaaaaagtaaag 102  Q
    |||||||||||||||  |||| |  ||||||||||||||||||||| |||||| |||||||||    
T  21823773 aagtatagacgtagcgtagcaaag-ccggtttgtggattgaaagtccttgttagaaagtaaag 21823712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 24056289 - 24056217
Alignment:
Q  110 aggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactctt 182  Q
    ||||||| |||||||||||||| |||||| |||||| |||||||||||||| |||||||| ||||||| ||||    
T  24056289 aggtaagagttttttctccatacgttcttactaaatgctaggaccttgttacgaaatagtggtagaaattctt 24056217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 24275564 - 24275642
Alignment:
Q  104 catctaaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactctt 182  Q
    ||||||||||||||| ||||||  | || ||||||  ||| | ||||||||||||||||||||||| ||| ||| ||||    
T  24275564 catctaaggtaagggctttttcctcgtacgttcttattaagtgctaggaccttgttatgaaatagtggtaaaaattctt 24275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 356963 - 356887
Alignment:
Q  106 tctaaggtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactctt 182  Q
    |||||||||||| ||||||| ||||| |||||| |||| | |||||||| |||| |||| |||| ||||||| ||||    
T  356963 tctaaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattctt 356887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 6308625 - 6308723
Alignment:
Q  112 gtaagggttttttctccataggttcttcctaaatactaggaccttgttatgaaatagtagtagaaactcttattttttgaaaagaaaaataatttaaat 210  Q
    ||||||| |||||  ||||||||||||  |||||  ||||||  |||||| ||||||| |||| || |||| | | |||||||||||||||||| ||||    
T  6308625 gtaagggcttttttcccataggttcttattaaatgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaaaaataattaaaat 6308723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University