View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_35 (Length: 285)

Name: NF19934_low_35
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_35
NF19934_low_35
[»] chr7 (3 HSPs)
chr7 (30-94)||(25506878-25506942)
chr7 (191-267)||(25507035-25507111)
chr7 (191-267)||(25558687-25558763)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 25506878 - 25506942
Alignment:
Q  30 tgtttatgtggacattgcagagagaagattaactattagagcagctgaaactgatgcaaatgaag 94  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25506878 tgtttatgttggcattgcagagagaagattaactattagagcagctgaaactgatgcaaatgaag 25506942  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 267
Target Start/End: Original strand, 25507035 - 25507111
Alignment:
Q  191 agcagttaagtctgcggcaccagataaggcgccggcaaaaaatggatcaagcttcaatcagcttcttggtattaaag 267  Q
    ||||||||| |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  25507035 agcagttaaatctgaggcaccggataaggcgcctgcgaaaaatggatcaagcttcaatcagcttcttggtattaaag 25507111  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 25558763 - 25558687
Alignment:
Q  191 agcagttaagtctgcggcaccagataaggcgccggcaaaaaatggatcaagcttcaatcagcttcttggtattaaag 267  Q
    ||||||||| |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  25558763 agcagttaaatctgaggcaccggataaggcgcctgcgaaaaatggatcaagcttcaatcagcttcttggtattaaag 25558687  T

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