View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_40 (Length: 259)

Name: NF19934_low_40
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_40
NF19934_low_40
[»] chr3 (6 HSPs)
chr3 (13-192)||(43409144-43409325)
chr3 (124-192)||(31326819-31326889)
chr3 (123-181)||(462290-462348)
chr3 (124-167)||(7867599-7867642)
chr3 (131-192)||(1901823-1901886)
chr3 (131-192)||(1911269-1911332)
[»] chr4 (6 HSPs)
chr4 (34-106)||(14195746-14195818)
chr4 (36-106)||(43389114-43389184)
chr4 (124-167)||(54801135-54801178)
chr4 (124-192)||(46567040-46567110)
chr4 (124-177)||(23836990-23837042)
chr4 (124-181)||(55510983-55511040)
[»] chr1 (5 HSPs)
chr1 (124-183)||(51172197-51172256)
chr1 (124-181)||(49621485-49621542)
chr1 (124-192)||(27352741-27352811)
chr1 (129-167)||(5043186-5043224)
chr1 (131-192)||(30530471-30530534)
[»] scaffold0002 (1 HSPs)
scaffold0002 (124-191)||(440830-440899)
[»] chr2 (5 HSPs)
chr2 (132-192)||(13553254-13553316)
chr2 (130-192)||(10288263-10288327)
chr2 (124-184)||(15283139-15283199)
chr2 (129-167)||(30856945-30856983)
chr2 (124-156)||(305858-305890)
[»] chr5 (3 HSPs)
chr5 (129-192)||(36624429-36624494)
chr5 (124-192)||(91326-91396)
chr5 (116-167)||(9636040-9636091)
[»] chr7 (5 HSPs)
chr7 (124-181)||(43079519-43079576)
chr7 (124-167)||(9031345-9031388)
chr7 (124-192)||(27688748-27688818)
chr7 (124-191)||(2469804-2469873)
chr7 (129-177)||(38023321-38023369)
[»] chr8 (2 HSPs)
chr8 (124-192)||(6005055-6005125)
chr8 (129-183)||(20853039-20853095)
[»] chr6 (1 HSPs)
chr6 (124-192)||(8173202-8173272)
[»] scaffold0003 (1 HSPs)
scaffold0003 (124-184)||(337239-337299)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 43409144 - 43409325
Alignment:
Q  13 agcaaaggtgaggggaaacgtacgtggagcgtgcaaaaatgtcagtctagcagctttggtaattgttgtatttgaacagtcattttcatacatacttaca 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43409144 agcaaaggtgaggggaaatgtacgtggagcgtgcaaaaatgtcagcctagcagctttggtaattgttgtatttgaacagtcattttcatacatacttaca 43409243  T
Q  113 ttattcgatttagcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||||||||| |||||||||||||||||||| |||| ||| ||| ||||||||||| ||| |||  ||||||||||||||||    
T  43409244 ttattcgattgagcattgatatttgaacaattatttagtataatctatttgacaatcttttttttctctcttttcattggtc 43409325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 31326889 - 31326819
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatt--tcttttctcttttcattggtc 192  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||| ||  | || ||||||||||||||||    
T  31326889 agcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctctcttttcattggtc 31326819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 462290 - 462348
Alignment:
Q  123 tagcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctct 181  Q
    ||||| |||||||||||||| ||||||||||||  ||||||||||  ||||||||||||    
T  462290 tagcaatgatatttgaacaaccatttggtacaacctatttgacaacctttcttttctct 462348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 7867599 - 7867642
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||    
T  7867599 agcaatgatatttgaacaaccatttggtacaatctatttgacaa 7867642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 1901823 - 1901886
Alignment:
Q  131 atatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||||||||||| ||||||||||||  ||||||||||  || ||||  ||||||||||||||||    
T  1901823 atatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1901886  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 1911269 - 1911332
Alignment:
Q  131 atatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||||||||||| ||||||||||||  ||||||||||  || ||||  ||||||||||||||||    
T  1911269 atatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1911332  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 14195818 - 14195746
Alignment:
Q  34 acgtggagcgtgcaaaaatgtcagtctagcagctttggtaattgttgtatttgaacagtcattttcatacata 106  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||    
T  14195818 acgtggagcgtgcaaaaatgtcagcctagcagctttggtaattgttgtacttaaacagtcattttcatacata 14195746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 43389184 - 43389114
Alignment:
Q  36 gtggagcgtgcaaaaatgtcagtctagcagctttggtaattgttgtatttgaacagtcattttcatacata 106  Q
    |||||||||||| ||||||||| ||||| |||||||||||||||||| || || ||| |||||||||||||    
T  43389184 gtggagcgtgcagaaatgtcagcctagctgctttggtaattgttgtacttaaatagttattttcatacata 43389114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 54801178 - 54801135
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  54801178 agcaatgatatttgaacaattatttggtacaatttatttgacaa 54801135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 46567110 - 46567040
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||  || ||||  ||||||||||||||||    
T  46567110 agcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 46567040  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 23836990 - 23837042
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttctttt 177  Q
    |||| |||||||| |||||||||||||||||| |||||||| ||| ||||||||    
T  23836990 agcaatgatatttaaacaatcatttggtacaacttatttgataat-tttctttt 23837042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 55511040 - 55510983
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctct 181  Q
    |||| |||||||||||||| |||||||||||| |||||||| ||  || |||||||||    
T  55511040 agcaatgatatttgaacaaccatttggtacaacttatttgaaaactttccttttctct 55510983  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 51172197 - 51172256
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctcttt 183  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  51172197 agcaatgatatttgaacaatcatttggtacaatctatttgacaatctttcttttctcttt 51172256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 49621542 - 49621485
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctct 181  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||| ||  ||||||||    
T  49621542 agcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctct 49621485  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 27352811 - 27352741
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttctttt--ctcttttcattggtc 192  Q
    |||| |||||||||||||| ||||||||||||  |||| |||||  ||||||||  |||||||||||||||    
T  27352811 agcaatgatatttgaacaaccatttggtacaacctattcgacaacctttcttttctctcttttcattggtc 27352741  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 5043224 - 5043186
Alignment:
Q  129 tgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5043224 tgatatttgaacaaccatttggtacaacttatttgacaa 5043186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 30530471 - 30530534
Alignment:
Q  131 atatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||||||||||| ||||||||||||  ||||||||||  || ||||  ||||||||||||||||    
T  30530471 atatttgaacaaccatttggtacaacctatttgacaactttccttttctctcttttcattggtc 30530534  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 440899 - 440830
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttctttt--ctcttttcattggt 191  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||  ||||||||||||||    
T  440899 agcaatgatatttgaacaaccatttggtacaatctatttgacaatctttcttttctctcttttcattggt 440830  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 13553316 - 13553254
Alignment:
Q  132 tatttgaacaatcatttggtacaatttatttgacaatatttctttt--ctcttttcattggtc 192  Q
    ||||||||||| ||||||||||||  ||||||||||| ||||||||  |||||||||||||||    
T  13553316 tatttgaacaaccatttggtacaacctatttgacaatctttcttttctctcttttcattggtc 13553254  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 10288327 - 10288263
Alignment:
Q  130 gatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||||||||| ||| |||||||||||| ||||||||||| || ||||  ||||||||||||||||    
T  10288327 gatatttgaataattatttggtacaatctatttgacaatcttccttttctctcttttcattggtc 10288263  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 15283139 - 15283199
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctctttt 184  Q
    |||| ||||||||||| || ||||| ||||||||||||||||||  || ||||||||||||    
T  15283139 agcaatgatatttgaataaccatttcgtacaatttatttgacaaccttccttttctctttt 15283199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 30856983 - 30856945
Alignment:
Q  129 tgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  30856983 tgatatatgaacaaccatttggtacaatttatttgacaa 30856945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 305858 - 305890
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaat 156  Q
    |||| ||||||||||||||||||||||||||||    
T  305858 agcaatgatatttgaacaatcatttggtacaat 305890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 36624494 - 36624429
Alignment:
Q  129 tgatatttgaacaatcatttggtacaatttatttgacaatatt--tcttttctcttttcattggtc 192  Q
    |||||||||||||| |||||| |||||||||||||||||| ||  | || ||||||||||||||||    
T  36624494 tgatatttgaacaagcatttgatacaatttatttgacaattttcattttctctcttttcattggtc 36624429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 91396 - 91326
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttctttt--ctcttttcattggtc 192  Q
    |||| |||||||||||||| |||||| |||||  ||||||||||  ||||||||  |||||||||||||||    
T  91396 agcaatgatatttgaacaaccatttgatacaacctatttgacaacctttcttttctctcttttcattggtc 91326  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 9636040 - 9636091
Alignment:
Q  116 ttcgatttagcattgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    ||||||| |||| |||||||||||||| ||||||||||||  ||||||||||    
T  9636040 ttcgattgagcaatgatatttgaacaaccatttggtacaacctatttgacaa 9636091  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 43079519 - 43079576
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctct 181  Q
    |||| |||||||||||||| ||||||||| || |||||||||||  ||||||||||||    
T  43079519 agcaatgatatttgaacaaccatttggtaaaacttatttgacaacctttcttttctct 43079576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 9031388 - 9031345
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaa 167  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||    
T  9031388 agcaatgatatttgaacaaccatttggtacaatctatttgacaa 9031345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 27688818 - 27688748
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||| ||||||||| ||||| |||||||||||| ||||||||||  || ||||  ||||||||||||||||    
T  27688818 agcaatgatatttgtacaattatttggtacaatctatttgacaaccttccttttctctcttttcattggtc 27688748  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 2469873 - 2469804
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctc--ttttcattggt 191  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||  || ||||||||  |||||||||||    
T  2469873 agcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctattttcattggt 2469804  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 38023321 - 38023369
Alignment:
Q  129 tgatatttgaacaatcatttggtacaatttatttgacaatatttctttt 177  Q
    |||||||||||||   ||||| |||||||||||||||||| ||||||||    
T  38023321 tgatatttgaacagctatttgatacaatttatttgacaatctttctttt 38023369  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 6005125 - 6005055
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||| |||| ||||||||| |||||||||||| |||||||||||  || ||||  ||||||||||||||||    
T  6005125 agcaatgatgtttgaacaaccatttggtacaacttatttgacaactttccttttctctcttttcattggtc 6005055  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 20853095 - 20853039
Alignment:
Q  129 tgatatttgaacaatcatttggtacaa--tttatttgacaatatttcttttctcttt 183  Q
    |||||||||||||||||||||||||||  ||| ||||||||| ||  ||||||||||    
T  20853095 tgatatttgaacaatcatttggtacaatctttttttgacaatcttctttttctcttt 20853039  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 8173202 - 8173272
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttt--tctcttttcattggtc 192  Q
    |||| |||||||||||||| ||||||||| ||  ||||||||||  |||||||  ||||||||||||||||    
T  8173202 agcaatgatatttgaacaaccatttggtataacctatttgacaacctttcttttctctcttttcattggtc 8173272  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 337299 - 337239
Alignment:
Q  124 agcattgatatttgaacaatcatttggtacaatttatttgacaatatttcttttctctttt 184  Q
    |||| ||||||||||||||| |||||||||||| | ||| ||||| ||  |||||||||||    
T  337299 agcaatgatatttgaacaattatttggtacaatattttttacaattttctttttctctttt 337239  T

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