View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19934_low_46 (Length: 242)

Name: NF19934_low_46
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19934_low_46
NF19934_low_46
[»] chr8 (11 HSPs)
chr8 (15-229)||(1965070-1965284)
chr8 (15-229)||(2011410-2011624)
chr8 (18-223)||(2436818-2437023)
chr8 (18-228)||(2004418-2004628)
chr8 (34-228)||(2007814-2008008)
chr8 (18-183)||(1969058-1969223)
chr8 (18-204)||(2014818-2015004)
chr8 (18-204)||(2018201-2018387)
chr8 (18-191)||(1963438-1963611)
chr8 (34-110)||(10201869-10201945)
chr8 (34-110)||(10208942-10209018)
[»] chr1 (2 HSPs)
chr1 (18-229)||(5902576-5902787)
chr1 (18-229)||(5906060-5906271)
[»] chr6 (3 HSPs)
chr6 (19-191)||(844977-845149)
chr6 (19-134)||(870261-870376)
chr6 (52-102)||(4299617-4299667)
[»] scaffold0184 (1 HSPs)
scaffold0184 (67-200)||(15204-15337)
[»] scaffold0078 (1 HSPs)
scaffold0078 (67-200)||(57507-57640)
[»] chr2 (1 HSPs)
chr2 (51-95)||(1351118-1351162)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 229
Target Start/End: Complemental strand, 1965284 - 1965070
Alignment:
Q  15 cataggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaagg 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965284 cataggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaagg 1965185  T
Q  115 atttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcatttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1965184 atttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcatttt 1965085  T
Q  215 gtgctgaaagatatg 229  Q
    |||||||||||||||    
T  1965084 gtgctgaaagatatg 1965070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 2011410 - 2011624
Alignment:
Q  15 cataggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaagg 114  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  2011410 cataggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaagg 2011509  T
Q  115 atttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcatttt 214  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||  ||||  ||| | |||||||    
T  2011510 atttgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggtaaaaattgtaaagcatcaacatcatttt 2011609  T
Q  215 gtgctgaaagatatg 229  Q
    |||||||||||||||    
T  2011610 gtgctgaaagatatg 2011624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 2437023 - 2436818
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| || ||||||||||||    
T  2437023 aggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatt 2436924  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg 217  Q
    |||| ||| ||||||||||||| ||| || |  ||||  ||||| |||||||| |  |||||| |||||||||||| |||||||||| | ||||||||||    
T  2436923 tgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaattgcaaagggtcaacatcattttgtg 2436824  T
Q  218 ctgaaa 223  Q
    ||||||    
T  2436823 ctgaaa 2436818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 2004418 - 2004628
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    ||||||||  ||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||| |||||||||| || | |||  | ||||| ||||||    
T  2004418 aggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatt 2004517  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg 217  Q
    |||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| | | ||| |||| | ||||||||||    
T  2004518 tgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaagaacccggatggcaaaaactgccaagtgtcagcatcattttgtg 2004617  T
Q  218 ctgaaagatat 228  Q
    |||||| ||||    
T  2004618 ctgaaaaatat 2004628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 228
Target Start/End: Original strand, 2007814 - 2008008
Alignment:
Q  34 ggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgaggtgccc 133  Q
    ||||| || ||||||||||| ||||||||||| ||||| ||||| ||  |||||||||| |||| |||  | ||||| |||||||||||||| || ||||    
T  2007814 ggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatttgaatctgcggcgccc 2007913  T
Q  134 atgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtgctgaaagatat 228  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||   ||||||| |||||||||||||    
T  2007914 atgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaactgcaaagtgtcaatatcattttctgctgaaagatat 2008008  T

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Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 1969223 - 1969058
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| ||| ||||||| || ||||||||  | ||||| ||||||    
T  1969223 aggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatt 1969124  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagat 183  Q
    |||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  1969123 tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagat 1969058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 2014818 - 2015004
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| ||||||| |||||| |||||  |||| ||||||||||||||| |||||||||| |||| |||||| |||| |||||||    
T  2014818 aggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt 2014917  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtca 204  Q
    |||||||| ||||||||||||| ||| || |  ||||  ||||| ||||||||||| ||||| || ||||||||||  |||||||||    
T  2014918 tgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaattgtaaagggtca 2015004  T

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Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 2018201 - 2018387
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| ||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||| |||| |||||| |||| |||||||    
T  2018201 aggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt 2018300  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtca 204  Q
    |||||||| ||||||||||||| ||| || |  ||||  |||||  |||||||||| ||||| || ||||||||||  |||||||||    
T  2018301 tgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaattgtaaagggtca 2018387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 1963611 - 1963438
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||| | |||||||||||| |||| ||||||||| ||||||||||| ||||||||||| |||  ||| ||||| ||||| ||||| ||||||||||||    
T  1963611 aggccaagtgattagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatt 1963512  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaa 191  Q
    |||||||| ||||||||||||| ||  || |  ||||  ||||| |||||||||||||||||||||||||||||    
T  1963511 tgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaaaa 1963438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 10201869 - 10201945
Alignment:
Q  34 ggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgact 110  Q
    ||||| |||| ||||||||| ||||| ||||| ||||||||||| |||||||  ||||||||||||||  |||||||    
T  10201869 ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgagatatgact 10201945  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 10208942 - 10209018
Alignment:
Q  34 ggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgact 110  Q
    ||||| |||| ||||||||| ||||| ||||| ||||||||||| |||||||  ||||||||||||||  |||||||    
T  10208942 ggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcacaaaccctccaattgagatatgact 10209018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 5902787 - 5902576
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| ||||||| |||||| |||||| |||| ||||| ||||||||||||||||| || |||| ||| || ||||||||  ||    
T  5902787 aggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagtgtt 5902688  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg 217  Q
    | |||||||||||||||||||| ||| || |  |||| |||||| ||||||||||| ||||||| ||||||||| | |||| | ||| | ||||||| ||    
T  5902687 tcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaaaactgcaaaagatcaacatcattttctg 5902588  T
Q  218 ctgaaagatatg 229  Q
    ||||||||||||    
T  5902587 ctgaaagatatg 5902576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 5906271 - 5906060
Alignment:
Q  18 aggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt 117  Q
    |||||||| |||||||||||| ||||||| | | || |||||| ||||  |||||||||| ||||||||||| || |||| |||  | ||||||||||||    
T  5906271 aggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatt 5906172  T
Q  118 tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaatttcaaagggtcaccgtcattttgtg 217  Q
    | |||||||||||||||||||| ||| || |  |||| |||||| ||||||||||| ||||||||||||||||  | | || | ||| | || |||||||    
T  5906171 tcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaacctgcgaaagatcaacatcgttttgtg 5906072  T
Q  218 ctgaaagatatg 229  Q
    ||||||||||||    
T  5906071 ctgaaagatatg 5906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 844977 - 845149
Alignment:
Q  19 ggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggattt 118  Q
    |||||||| |||| ||| | |||||  || ||||||||||| ||||| ||||||||||| ||| | || ||||| |||||||||||||||| ||| ||||    
T  844977 ggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaattt 845076  T
Q  119 gaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaaaa 191  Q
     ||| || ||||||||  ||| ||  || ||||||||| | || ||||| |||||||| |||  |||||||||    
T  845077 caatttgtggtgcccaatatggaactactaaacctttcccttttgttctttccaaaaaaccatttggtaaaaa 845149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 870261 - 870376
Alignment:
Q  19 ggccatgcgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggattt 118  Q
    |||||||| |||| ||| | |||||  || ||||||||||| ||||| ||||||||||| ||| | || ||||| |||||||||||||||| ||| ||||    
T  870261 ggccatgctattattggaattccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattgaactatgaccaagaattt 870360  T
Q  119 gaatctgaggtgccca 134  Q
     ||| || ||||||||    
T  870361 caatttgtggtgccca 870376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 4299667 - 4299617
Alignment:
Q  52 ctttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaa 102  Q
    ||||||| |||||||||||| ||||||||| ||||||| || |||||||||    
T  4299667 ctttcaatggttgagttccatccacagtgagtcaagaatccaccaattgaa 4299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 15204 - 15337
Alignment:
Q  67 ttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttc 166  Q
    ||||||||||| ||||| || || || |||| |||||||||  |||| |||| ||  ||||||||||||||||  |  | ||||||||| || || ||||    
T  15204 ttccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaacctttttctttggttc 15303  T
Q  167 tctccaaaaacccagatggtaaaaatttcaaagg 200  Q
    | |||||||||||    |||||||||||||||||    
T  15304 tttccaaaaaccctataggtaaaaatttcaaagg 15337  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 57640 - 57507
Alignment:
Q  67 ttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttc 166  Q
    ||||||||||| ||||| || || || |||| |||||||||  |||| |||| ||  ||||||||||||||||  |  | ||||||||| || || ||||    
T  57640 ttccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaaaataaaacctttttctttggttc 57541  T
Q  167 tctccaaaaacccagatggtaaaaatttcaaagg 200  Q
    | |||||||||||    |||||||||||||||||    
T  57540 tttccaaaaaccctataggtaaaaatttcaaagg 57507  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 1351162 - 1351118
Alignment:
Q  51 actttcaagggttgagttccaaccacagtgactcaagaaccctcc 95  Q
    ||||||||  ||||| |||||||||||||||||||| ||||||||    
T  1351162 actttcaattgttgaattccaaccacagtgactcaaaaaccctcc 1351118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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