View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_47 (Length: 237)
Name: NF19934_low_47
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 21123039 - 21123259
Alignment:
| Q |
1 |
actatgtcttcttccttaaaaggaaaggataatactgagtggaattcaacattatctaagttgatggtttcaaaggcatctgatgatcatgaaggaggag |
100 |
Q |
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| T |
21123039 |
actatgtcttcttccttaaaaggaaaggataataatgagtggaattcaacattagctaagttgatggtttcaaaggcatctgatgatcatgaaggaggag |
21123138 |
T |
|
| Q |
101 |
agagcgatgctttaaattgtatcaagtccagctatgagtgtttacaaaatagagcagcagaactgatatttctgatgtgctgtatgtttcttgaagacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21123139 |
agagcgatgctttaaattgtatcaagtccagctatgagtgtttacaaaatagagaagcagaacagatatttctgatgtgctgtatgtttcttgaagacta |
21123238 |
T |
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| Q |
201 |
tcacatcccagtagaagattt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
21123239 |
tcacatcccagtagaagattt |
21123259 |
T |
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