View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19934_low_5 (Length: 490)
Name: NF19934_low_5
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 1731900 - 1731424
Alignment:
| Q |
1 |
aaaataaataaaaactatgcacacaaagcagatacctgaaaagtggtcgtttagctcttccacaatttctgaaccctcaaactgcaaaaaat--tatagt |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1731900 |
aaaataaataaaaactatgcacacaaagcagatacctgaaaagtggtcgtttagctcttccacaatttctgaaccctcaaactgcaaaaaaaaatatagt |
1731801 |
T |
|
| Q |
99 |
gaagtattcgaaaatgaaatgggataagtggctaagaatgttgcaaagatgcatgttcaataaaactgaagtttatatcatgtttatcgaatcttagggc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1731800 |
gaagtattcgaaaatgaaatgggataagtggctaagaatgttgcaaagatgcatgttcaataaaactgaagtttatatcacgtttatcgaatcttagggc |
1731701 |
T |
|
| Q |
199 |
cttagttaaacaaatatccatgttttaggaaaattgatatattgatgcattgaagaaatttaagtcttcattttaagaaaaggaaatcaacaattcttca |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1731700 |
cttagttaaacaaatatgcatgttttaggaaaattgatatattgatgcattgaagaaatttaagtcttcattttaagaaaaggaaatcaacaattcttca |
1731601 |
T |
|
| Q |
299 |
aatcaaaatggtaatatatgtttatttgatttaagatttaagctcat--tatgtgttacagcatgaaaaatacatgctttgtaatcaggtgacttcatgg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1731600 |
aatcaaaatggtaatatatgtttatttgatttaagatttaagctcattatatgtgttacagcatgaaaaagacatgctttgtaatcaggtgacttcatgg |
1731501 |
T |
|
| Q |
397 |
gagaagagtatatattgaatgtgattccattttcaagaatgatgattaagatttaatacacagggatgagttgcatg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1731500 |
gagaagagtatatattgaatgtgattccattttcaagaatgatgattaagatttaatacacagggatgagttgcatg |
1731424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University