View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19934_low_9 (Length: 459)
Name: NF19934_low_9
Description: NF19934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19934_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 33849447 - 33849876
Alignment:
| Q |
16 |
aagaaagtaaa-catacacaataacaagtaaaagagtttggaaaaacacacacccatttttgttgctcgggtcacactcctttgcctctgaataattaga |
114 |
Q |
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| T |
33849447 |
aagaaagtaaaacatacacaataacaagttaaagagcttggaaaaacacac--ccatttttgttgctcgggtcacactcctttgcctctgaatcgttaga |
33849544 |
T |
|
| Q |
115 |
tttctaaatgaataattctgggtaagaaataggatacataaaggtnnnnnnnttcacatagaacgtgtcgagcacatgggccaatgaacattttctttct |
214 |
Q |
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| T |
33849545 |
tttctaaatgaataattctgggtaagaaataggatatataaaggtaaaaaaattcacatagaacgtgtcgagcgcatgggccaatgaacattttctttct |
33849644 |
T |
|
| Q |
215 |
ttgcagcctttaggcacccccgacacatgggtctatgcccggggagcatggaccagagttaaaatccttcattttcttaattctatatgtattttttatc |
314 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33849645 |
ttgcagcctttaggcgcccccgacacatcggtctatgcccggggagcatggaccagagttaaaatccttcattttcttaattcttcatgtattttttatc |
33849744 |
T |
|
| Q |
315 |
gtgt-atatgagcttaaaacttgggacataattattccaagttgttttgtcttcaaatcttcattgtacaacatctagctttcatagctttcttgaggcg |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33849745 |
gtgtaatatgagcttaaaacttgggacataattattccaagttgttttgtcttcaaatcttcattgtacaacatctagctttcatagctttcttgaggcg |
33849844 |
T |
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| Q |
414 |
tcttagttggccatattgcatgattcataatg |
445 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33849845 |
tcttagttggccatattgcatgattcataatg |
33849876 |
T |
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