View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19935_high_4 (Length: 363)
Name: NF19935_high_4
Description: NF19935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19935_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 20457996 - 20457641
Alignment:
| Q |
1 |
aacgaagttgcacacaaaattcgatccattagttttgtgaacaccgaatattactttatcaataacaaagaaataaatcatatacacaacttataaccaa |
100 |
Q |
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| T |
20457996 |
aacgaagttgcactcaaaattcgatccactagttttgtgaacaccaaatattactttatcaataacaaagaaataaatcatatacacaacttataaccaa |
20457897 |
T |
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| Q |
101 |
ttccacggattctgctatagcagagtaatctacatgaatattaaaatagatggtataaaaatttaacaaaacaatcatcagaaatgtacatttggaattc |
200 |
Q |
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| T |
20457896 |
ttccacggattctgctatagcagagtaatctacatgaatattaagatagatggtataaaaatttaacaaaacaatcatcagaaatgtacatttggaattc |
20457797 |
T |
|
| Q |
201 |
cagcacttttttgacagaggtaataacaacattatcaaatgatatagtaattatgaaacaaactccaattgctaaaacaatatacctggccttctccgct |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
20457796 |
cagcacttttttgacagaggtaaaaacaacattatcaagtgatatagtaattatgaaacaaattccaattgctaaaacaatatacctggccttctccact |
20457697 |
T |
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| Q |
301 |
agaactggatggtgattgagtagaagtcgaatctgagtttctactcgtctgtggtg |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20457696 |
agaactggatggtgattgagtagaagtcgaatctgagtttctactcgtctgtggtg |
20457641 |
T |
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