View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19935_high_5 (Length: 358)

Name: NF19935_high_5
Description: NF19935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19935_high_5
NF19935_high_5
[»] chr3 (10 HSPs)
chr3 (26-358)||(1717661-1717992)
chr3 (26-93)||(1739395-1739462)
chr3 (191-272)||(46893416-46893497)
chr3 (191-245)||(13639459-13639513)
chr3 (26-75)||(1754877-1754926)
chr3 (191-272)||(29235677-29235758)
chr3 (191-259)||(48543213-48543281)
chr3 (189-272)||(54186997-54187080)
chr3 (191-260)||(20909363-20909432)
chr3 (191-223)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (190-272)||(30085447-30085529)
chr8 (191-272)||(33440574-33440655)
chr8 (191-272)||(28700583-28700664)
chr8 (191-269)||(6580862-6580939)
chr8 (193-243)||(31703822-31703872)
chr8 (208-272)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (190-275)||(51475233-51475318)
chr4 (191-259)||(31699549-31699617)
chr4 (191-255)||(37306476-37306540)
chr4 (190-267)||(6540258-6540335)
chr4 (191-245)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (191-258)||(709-776)
[»] chr5 (7 HSPs)
chr5 (191-275)||(41020248-41020332)
chr5 (191-253)||(42958487-42958549)
chr5 (191-259)||(5990589-5990657)
chr5 (191-259)||(18237206-18237274)
chr5 (191-259)||(30892150-30892218)
chr5 (191-259)||(32153763-32153831)
chr5 (174-246)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (191-246)||(932035-932090)
chr1 (199-272)||(11709656-11709729)
chr1 (191-272)||(19078941-19079022)
chr1 (191-272)||(19126829-19126910)
chr1 (193-259)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (190-272)||(17878710-17878792)
chr7 (191-259)||(557447-557515)
chr7 (190-246)||(47822035-47822091)
chr7 (191-272)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (193-259)||(5140042-5140108)
chr2 (199-275)||(864178-864254)
chr2 (191-259)||(6951739-6951808)
chr2 (177-270)||(16011989-16012082)
chr2 (191-259)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (191-272)||(7447636-7447716)
chr6 (192-272)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 26 - 358
Target Start/End: Complemental strand, 1717992 - 1717661
Alignment:
Q  26 catacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctgaaacagaatgttg 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||     
T  1717992 catacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaaatttattcatatattcctcaggcagaatgtta 1717893  T
Q  126 agaacactctcttactaacacnnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatt 225  Q
    |||||||||||||||||| ||        |||| | || |||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  1717892 agaacactctcttactaatactttttct-aacactcactctcgtattagatgaaatctatatggatctcaccactttatgtatgatccatttccaatatt 1717794  T
Q  226 tgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggcattcctccttagacagaatgctaggaacactcttactagaact 325  Q
    |||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | |||    
T  1717793 tgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagcatttctccttagacagaatgctaggaacactcttactggcact 1717694  T
Q  326 ttctctaagattcactctccttatttaaaactt 358  Q
    |||||||||||||||||||||||||||||||||    
T  1717693 ttctctaagattcactctccttatttaaaactt 1717661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 1739462 - 1739395
Alignment:
Q  26 catacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaaa 93  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  1739462 catacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaaa 1739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 245  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 1754926 - 1754877
Alignment:
Q  26 catacattcctcagacagtctctgtcatagaattcttagcaaaaaggttt 75  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  1754926 catacatacctcagacagtctctgtcatagatttcctagcaaaaaggttt 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 54186997 - 54187080
Alignment:
Q  189 aatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54186997 aatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 260  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaata 223  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  190 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 269
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 269  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  193 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 243  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  208 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  190 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 275  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 255  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  190 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 267  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 245  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 258  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 275  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 253  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  174 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 246  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 246  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  199 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  193 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  190 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  190 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 246  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  193 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  199 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 275  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 259  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 270
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  177 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 270  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 259  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  191 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  192 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 272  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

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