View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19935_low_1 (Length: 662)

Name: NF19935_low_1
Description: NF19935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19935_low_1
NF19935_low_1
[»] chr5 (10 HSPs)
chr5 (24-654)||(30510096-30510727)
chr5 (24-654)||(30550436-30551067)
chr5 (24-654)||(35122757-35123386)
chr5 (25-202)||(37220634-37220811)
chr5 (25-211)||(22540929-22541116)
chr5 (292-412)||(31862320-31862440)
chr5 (293-411)||(29094801-29094918)
chr5 (141-206)||(3199625-3199690)
chr5 (141-206)||(4399454-4399519)
chr5 (299-368)||(6264535-6264604)
[»] chr7 (7 HSPs)
chr7 (25-654)||(43571614-43572242)
chr7 (25-446)||(37724145-37724565)
chr7 (95-368)||(5020909-5021180)
chr7 (220-399)||(12379031-12379210)
chr7 (293-374)||(5326499-5326580)
chr7 (299-364)||(13439787-13439852)
chr7 (299-364)||(28327090-28327155)
[»] chr6 (6 HSPs)
chr6 (24-654)||(33804241-33804870)
chr6 (141-654)||(4474280-4474787)
chr6 (308-412)||(4406755-4406859)
chr6 (292-364)||(15673552-15673624)
chr6 (293-411)||(24749376-24749494)
chr6 (299-364)||(23347807-23347872)
[»] chr1 (11 HSPs)
chr1 (24-654)||(16873543-16874172)
chr1 (168-411)||(44929840-44930081)
chr1 (300-450)||(44415255-44415405)
chr1 (32-126)||(48321744-48321839)
chr1 (174-211)||(39730290-39730327)
chr1 (142-206)||(41503399-41503463)
chr1 (174-210)||(39730235-39730271)
chr1 (299-410)||(34853935-34854046)
chr1 (299-364)||(32353638-32353703)
chr1 (299-364)||(48073773-48073838)
chr1 (292-364)||(3692354-3692426)
[»] scaffold0308 (2 HSPs)
scaffold0308 (275-654)||(16856-17235)
scaffold0308 (32-272)||(16131-16369)
[»] chr3 (9 HSPs)
chr3 (33-531)||(9163303-9163800)
chr3 (95-407)||(19824093-19824403)
chr3 (293-411)||(15484077-15484195)
chr3 (293-411)||(18369249-18369367)
chr3 (299-364)||(6176819-6176884)
chr3 (299-364)||(7146775-7146840)
chr3 (299-364)||(23601507-23601572)
chr3 (302-399)||(49732239-49732336)
chr3 (299-411)||(36708615-36708727)
[»] chr4 (13 HSPs)
chr4 (25-387)||(20668946-20669308)
chr4 (28-172)||(35957513-35957657)
chr4 (25-206)||(42249886-42250068)
chr4 (302-399)||(47540662-47540759)
chr4 (306-411)||(53809582-53809687)
chr4 (292-364)||(2631125-2631197)
chr4 (312-408)||(4640975-4641071)
chr4 (309-399)||(3130285-3130375)
chr4 (293-411)||(50451807-50451925)
chr4 (586-623)||(15740242-15740279)
chr4 (299-364)||(23873817-23873882)
chr4 (299-364)||(55298357-55298422)
chr4 (299-399)||(8487287-8487387)
[»] chr8 (10 HSPs)
chr8 (299-411)||(27083349-27083461)
chr8 (220-409)||(7555102-7555291)
chr8 (299-376)||(6900630-6900707)
chr8 (575-656)||(7555457-7555538)
chr8 (292-364)||(16421350-16421422)
chr8 (308-386)||(36897695-36897773)
chr8 (299-412)||(30501702-30501815)
chr8 (579-648)||(37718861-37718930)
chr8 (359-411)||(23942111-23942163)
chr8 (147-211)||(30501551-30501615)
[»] chr2 (4 HSPs)
chr2 (141-205)||(6267463-6267527)
chr2 (151-206)||(11234962-11235017)
chr2 (299-364)||(33547606-33547671)
chr2 (299-364)||(43627233-43627298)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 24 - 654
Target Start/End: Complemental strand, 30510727 - 30510096
Alignment:
Q  24 gaacacatcaaaatggaattatattaacacaa-cgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcc 122  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  30510727 gaacacatcaaaatggaattatattaacacaaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacagagtcc 30510628  T
Q  123 aaaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagc 222  Q
    || |||||||| |||||||||  ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |          ||    
T  30510627 aacacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaacaaacacgttttttttttgc 30510528  T
Q  223 tttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacaca 322  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  30510527 tttcagccaccgtaatgataacaatttaaccttatccaataaccttgggacatccgttacaacattaccaaacaagcggttattacgttcgatccacaca 30510428  T
Q  323 atccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattat 422  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  30510427 atccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattat 30510328  T
Q  423 tcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatg 522  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  30510327 tcggatccgcccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatg 30510228  T
Q  523 accacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagca 622  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  30510227 accacagcccataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagca 30510128  T
Q  623 aaaatcgagacctttaaggggacctgatgatg 654  Q
    ||||||||||||||||||||||||||| ||||    
T  30510127 aaaatcgagacctttaaggggacctgacgatg 30510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 24 - 654
Target Start/End: Complemental strand, 30551067 - 30550436
Alignment:
Q  24 gaacacatcaaaatggaattatattaacacaa-cgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcc 122  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  30551067 gaacacatcaaaatggaattatattaacacaaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacagagtcc 30550968  T
Q  123 aaaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagc 222  Q
    || |||||||| |||||||||  ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |          ||    
T  30550967 aacacaaagaacaaaaaacaggaattaaccaatgcctaaacataacaaaggactagaccaccacatatgagtaccataaacaaacacgttttttttttgc 30550868  T
Q  223 tttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacaca 322  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  30550867 tttcagccaccgtaatgataacaatttaaccttatccaataaccttgggacatccgttacaacattaccaaacaagcggttattacgttcgatccacaca 30550768  T
Q  323 atccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattat 422  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  30550767 atccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttaccaacacctgtcgagtaagtaaactgcactaagtgatcatgaagattat 30550668  T
Q  423 tcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatg 522  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||    
T  30550667 tcggatccgcccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatg 30550568  T
Q  523 accacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagca 622  Q
    |||||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  30550567 accacagcccataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagca 30550468  T
Q  623 aaaatcgagacctttaaggggacctgatgatg 654  Q
    ||||||||||||||||||||||||||| ||||    
T  30550467 aaaatcgagacctttaaggggacctgacgatg 30550436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 654
Target Start/End: Complemental strand, 35123386 - 35122757
Alignment:
Q  24 gaacacatcaaaatggaattatattaacacaacgta-gcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcc 122  Q
    ||||| |||||||||| ||||||||| |||||| || |||  || ||||||||||  ||||||||     | |||||||||||||| ||||||| |||||    
T  35123386 gaacaaatcaaaatgggattatattaccacaacataagcaattttcaagcacaaggcgtgcctaggaaattactacaagatacaaagtgttacagagtcc 35123287  T
Q  123 aaaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagc 222  Q
    |||| || ||  |   | ||||| ||| ||||| | |||||||   | || ||||||||||||||||| ||||||||||||||||||||        |||    
T  35123286 aaaataa-gataatctagcagtggttagccaattcttaaacatgttataggacttgaccaccacatctaagtaccataaacaaacatggctttttc-agc 35123189  T
Q  223 tttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacaca 322  Q
    ||||||||||| |||||||||||| |||| ||||||||| ||||| |||| |||||||||| |||||  ||||| || ||||||||||||||||||||||    
T  35123188 tttcagccaccctaatgataacaatttaatcttatccaacaacctcgggacgtccgttacaacattattaaacaggcagttattacgttcgttccacaca 35123089  T
Q  323 atccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattat 422  Q
    ||||||||||| |||||||| ||||| || | ||| |||||||||| |||||||||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  35123088 atccaagtacatagaatccagattagatgtaaaaaggaacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattat 35122989  T
Q  423 tcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatg 522  Q
    |   |||| |||||||| |||||| |||||| ||||||| ||||||||| ||||||| |||||| |||||||| || |||||||||||||||||||||||    
T  35122988 taaaatccacccccataaaacctagccaatttcgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacatg 35122889  T
Q  523 accacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagca 622  Q
    ||| |||||  || |||| | ||||||||| |||   |||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||    
T  35122888 accgcatcctgtatcacaaagagtcgcctctgaatgaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagca 35122789  T
Q  623 aaaatcgagacctttaaggggacctgatgatg 654  Q
    |||||||||||||| |||||||||||||||||    
T  35122788 aaaatcgagaccttcaaggggacctgatgatg 35122757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 37220634 - 37220811
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaa 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  37220634 aacacatcaaaatggaattatattaacacaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacaaagtccaa 37220733  T
Q  125 aacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaa 202  Q
    ||||||||| |||||||||  ||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  37220734 aacaaagaacaaaaaacaggaattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccataaa 37220811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 22540929 - 22541116
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaac-gtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcca 123  Q
    |||| |||||||||||||||||||||||||||  |||||| || |||| | ||| |||||||| |   || |||||||||||||| ||||||| ||||||    
T  22540929 aacaaatcaaaatggaattatattaacacaacaatagcatttttcaaggataaggtgtgcctaaaaaactactacaagatacaaagtgttacagagtcca 22541028  T
Q  124 aaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatgg 211  Q
    ||| |||||  |   | | |||||||  ||||||||||||||  || || ||||||||| ||||| | ||||||||||||||||||||    
T  22541029 aaataaagagaatctagcggtgattagtcaatgcctaaacatgtcataggacttgaccatcacatataagtaccataaacaaacatgg 22541116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 412
Target Start/End: Original strand, 31862320 - 31862440
Alignment:
Q  292 aaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaa 391  Q
    ||||||| | |||||| |||| ||||||| || |||   ||| |||| ||||||||||||||  ||||| ||| ||| ||| ||| |||||||||  | |    
T  31862320 aaacaagtgattattatgttcattccacaaaacccagacacaaagaagccatattagttgcatgaaagaccgtctagctttgccaccacctgtcatatga 31862419  T
Q  392 gtaaactgcactaaatgatca 412  Q
    |||||||||| ||||||||||    
T  31862420 gtaaactgcaataaatgatca 31862440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 29094918 - 29094801
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaag 392  Q
    |||||||||||||||||||| ||||| | || ||||| ||||| || ||| || ||| |||  || |||| ||||| ||| ||||||||||||||   ||    
T  29094918 aacaagcggttattacgttcattccatataacccaagaacacaaaagccaaataagtcgcatgaa-gaacttttagcttttccaacacctgtcaaaagag 29094820  T
Q  393 taaactgcactaaatgatc 411  Q
    |||||||||| || |||||    
T  29094819 taaactgcaccaagtgatc 29094801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 3199690 - 3199625
Alignment:
Q  141 cagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaa 206  Q
    |||||||||  ||||||| ||||| | || || ||||||||||||||||||||| ||| |||||||    
T  3199690 cagtgattaggcaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaa 3199625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 4399454 - 4399519
Alignment:
Q  141 cagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaa 206  Q
    ||||||||| | |||||| ||||| | || || ||||||||||||||||||||| ||| |||||||    
T  4399454 cagtgattagctaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaa 4399519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 6264604 - 6264535
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttag 368  Q
    |||||||| ||||| ||||| |||| |||   ||| |||| |||||||||||||| ||||||||||||||    
T  6264604 cggttatttcgttcattccaaacaacccagacacatagaagccatattagttgcataaaagaacgtttag 6264535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 25 - 654
Target Start/End: Original strand, 43571614 - 43572242
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaa 124  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||    
T  43571614 aacacatcaaaatggaattaaattaacacaacatagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacaaagtctaa 43571713  T
Q  125 aacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctt 224  Q
    ||||||||| ||||| ||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||| |          ||||    
T  43571714 aacaaagaacaaaaagcagggattaaccaatgcctagacataacaaaggactagaccaccacatctgagtaccaaaaacaaacacgttttttttt-gctt 43571812  T
Q  225 tcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaat 324  Q
    | ||||||||||| |||||||| |||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43571813 taagccaccgtaacgataacaatttaaccttatccaataaccttgggacgttcgttacaacattaccaaacaagcggttattacgttcgttccacacaat 43571912  T
Q  325 ccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattc 424  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||    
T  43571913 ccaagtacacagaatccaaattagctgcagaaaagaacgtttagctttaccaacacttgtcaagtaagtaaactgcactaagtgatcatgaaggttattc 43572012  T
Q  425 ggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatgac 524  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  43572013 ggatccgcccccatagaacctagccaattgcgcacctgctgccacaacaaaacagtatttgggcaaaataaaaataaatgttcggccgtttcaacatgac 43572112  T
Q  525 cacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagcaaa 624  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  43572113 cacaacccataacacaaagagtcgcctcagaactgagaacaccacgagctgccaaatttgcttttgaaggtaaccgatcccggagaagtctccaagcaaa 43572212  T
Q  625 aatcgagacctttaaggggacctgatgatg 654  Q
    ||||||||||||||||||||||||| ||||    
T  43572213 aatcgagacctttaaggggacctgacgatg 43572242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 25 - 446
Target Start/End: Complemental strand, 37724565 - 37724145
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaa 124  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| | ||| |||  |||||||||||||||||||||||||||||||||||    
T  37724565 aacacatcaaaatggaattatattaacacaacgtagcagtttccaagcacaaggtatgcttaggattctgctacaagatacaaaatgttacatagtccaa 37724466  T
Q  125 aacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctt 224  Q
    ||||||||| |||| ||||||||||  ||||||||| | |||||| || |||||||||||||||||||||||||||||||||||||         |||||    
T  37724465 aacaaagaacaaaacacagtgattatgcaatgcctagatataacataggacttgaccaccacatctgagtaccataaacaaacatgagtttttttagctt 37724366  T
Q  225 tcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaat 324  Q
    ||||||||| |||||||||||| |||| ||||||||| |||||||| | |||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  37724365 tcagccaccctaatgataacaatttaatcttatccaacaacctgggtacgtccgttacaacattactaaacaagtggttattacgttcgttccacacaat 37724266  T
Q  325 ccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattc 424  Q
    | |||||||||||||||| ||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37724265 caaagtacacagaatccaaattagctgcagaaaagaacgtttaactttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattc 37724166  T
Q  425 ggatccgcccccatagaaccta 446  Q
    ||||||| ||||||||||||||    
T  37724165 ggatccg-ccccatagaaccta 37724145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 95 - 368
Target Start/End: Complemental strand, 5021180 - 5020909
Alignment:
Q  95 ctacaagatacaaaatgttacatagtccaaaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagt 194  Q
    |||||||||||||| ||||||| ||||||||| || ||  ||  | ||||| ||||||||| ||||||||||  | || |||||||||||||||||||||    
T  5021180 ctacaagatacaaagtgttacaaagtccaaaataa-gagaaactagcagtggttaaccaattcctaaacatattataggacttgaccaccacatctgagt 5021082  T
Q  195 accataaacaaacatggnnnnnnnnagctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaa 294  Q
    |||||||||||||||||        |||||||||||||| |||||||||||| |||| ||||||||| ||||  |||| |||||||||| |||||  |||    
T  5021081 accataaacaaacatggctttttt-agctttcagccaccctaatgataacaatttaatcttatccaacaaccgcgggacgtccgttacaacattattaaa 5020983  T
Q  295 caagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttag 368  Q
    || |||||||||||||||||||||||||||||||||||| |||||||| ||||| || | ||| ||||||||||    
T  5020982 caggcggttattacgttcgttccacacaatccaagtacatagaatccagattagctgtaaaaaggaacgtttag 5020909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 399
Target Start/End: Complemental strand, 12379210 - 12379031
Alignment:
Q  220 agctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccac 319  Q
    |||||||||||| | ||| || ||||||||||| || || ||||| | |||||||   || ||  |||||  ||||| ||  ||||| ||||| ||||||    
T  12379210 agctttcagccaacctaaagacaacaacttaacattgtctaataaacaggggatgggagtaactacattattaaacaggcatttatttcgttcattccac 12379111  T
Q  320 acaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactg 399  Q
    ||||  || | |||||||| |||||  ||||||| |||||||||| ||| ||||||| ||||||| || |||||||||||    
T  12379110 acaacgcaggcacacagaagccatacgagttgcataaaagaacgtctagctttaccaccacctgtaaaataagtaaactg 12379031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 5326499 - 5326580
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttac 374  Q
    ||||| ||||| || ||||||||||| |||| |||||||||||||| ||| ||||| || || || |||| ||||| |||||    
T  5326499 aacaaccggttgtttcgttcgttccagacaacccaagtacacagaagccaaattagctgtaggaatgaacatttagctttac 5326580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 13439787 - 13439852
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  13439787 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 13439852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 28327090 - 28327155
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||||| ||| |||| ||| || ||||||| ||||||||||    
T  28327090 cggttattacgttcattccaaacaacccaagcacaaagaagccaaataagttgcataaaagaacgt 28327155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 654
Target Start/End: Original strand, 33804241 - 33804870
Alignment:
Q  24 gaacacatcaaaatggaattatattaacacaacg-tagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcc 122  Q
    ||||| |||||||||||||||||||||||||||| |||||  ||||||||||||| | |||||||    ||| |||||||||||||  |||||| |||||    
T  33804241 gaacaaatcaaaatggaattatattaacacaacggtagcaatttccaagcacaaggtatgcctaggaaactgttacaagatacaaagagttacagagtcc 33804340  T
Q  123 aaaacaa-agaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnag 221  Q
    |||| || |||||| |   || || ||| ||||| ||||||  |  || || ||||||||||||||||||||||||||||||||||||||        ||    
T  33804341 aaaataagagaatatag--cattggttagccaattcctaaaactgtcataggacttgaccaccacatctgagtaccataaacaaacatggcattttt-ag 33804437  T
Q  222 ctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacac 321  Q
    |||| ||||||| |||||||||||| |||| ||||||||| ||||| |||| |||||||||| |||||  ||||||||||||||||||||||||| ||||    
T  33804438 ctttaagccaccctaatgataacaatttaatcttatccaacaaccttgggacgtccgttacaacattattaaacaagcggttattacgttcgttctacac 33804537  T
Q  322 aatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagatta 421  Q
    |||||||||||||| |||||| | ||| |||||||| |||| ||||| |||||||||||||||||| ||||||| |||||| ||||||||| ||||||||    
T  33804538 aatccaagtacacataatccagactagctgcagaaaggaacatttagctttaccaacacctgtcaaataagtaagctgcaccaaatgatcaggaagatta 33804637  T
Q  422 ttcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacat 521  Q
    || |||||| |||||||||||| || |||||||||||||| |||||||||||| |||| |||||| |||||||| ||||| ||||||||| |||||||||    
T  33804638 ttaggatccacccccatagaacttagccaattgcgcacctgctgccacaacaatacagaatttgggcaaaataaaaataagtgttcggctatttcaacat 33804737  T
Q  522 gaccacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagc 621  Q
    |||| |||||  || |||| | ||||| ||| ||| | ||||||||| |||| |||||||||||| |||||||||||||||| || ||||||||||||||    
T  33804738 gaccgcatcctgtatcacaaagagtcgtctcggaattaagaacaccatgagctgccaaatttgctcttgtaggtaaccgatcccgaagaagtctccaagc 33804837  T
Q  622 aaaaatcgagacctttaaggggacctgatgatg 654  Q
    |||||| |||||||| ||||| |||||||||||    
T  33804838 aaaaattgagaccttcaagggaacctgatgatg 33804870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 141 - 654
Target Start/End: Original strand, 4474280 - 4474787
Alignment:
Q  141 cagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctttcagccaccgtaatga 240  Q
    ||||||||| |||||||||||||||  || || ||||||||||||| |||||||||||||||     ||||        |||||||||||||| ||| ||    
T  4474280 cagtgattatccaatgcctaaacatgccataggacttgaccaccacctctgagtaccataaa-----atggctttttt-agctttcagccaccttaagga 4474373  T
Q  241 taacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaatccaagtacacagaatc 340  Q
    |||||| |||| ||||||||| ||||| ||||  ||||||||| |||||  ||||| | |||||||||||||| ||||||| | ||||||||| |||| |    
T  4474374 taacaatttaatcttatccaacaacctagggacatccgttacaacattattaaacatgtggttattacgttcggtccacacgacccaagtacaaagaagc 4474473  T
Q  341 catattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgcccccatag 440  Q
    || || || |||| ||| |||||||||| |||||||| ||||||||| |||| ||||||||| |||| |||   ||||||||| |||||| ||||||||     
T  4474474 cagatgagctgcataaaggaacgtttagctttaccaaaacctgtcaaataagaaaactgcaccaaattatcggaaagattattgggatccacccccatac 4474573  T
Q  441 aacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatgaccacatcccataacaca 540  Q
    |||||| |||||||||||||| |||||||||||| | ||||||||| |||  ||| || ||||| || || |||||||||||||| || ||  || ||||    
T  4474574 aacctaaccaattgcgcacctgctgccacaacaagatagtatttgggcaatgtaaaaacaaatgatcagcggtttcaacatgaccgcaacctgtaccaca 4474673  T
Q  541 tatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagcaaaaatcgagacctttaag 640  Q
     | ||| ||||| ||| | ||||||||||| || || || |||||||| ||||| ||| ||| ||| ||||| | |||||||||||| || ||||| ||     
T  4474674 aagagttgcctcggaatttagaacaccacgggctgcaaagtttgctttcgtaggcaactgatttcgaagaagccgccaagcaaaaattgataccttcaac 4474773  T
Q  641 gggacctgatgatg 654  Q
    || |||||||||||    
T  4474774 ggaacctgatgatg 4474787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 4406755 - 4406859
Alignment:
Q  308 cgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaat 407  Q
    ||||| |||||||||| ||| | ||| ||||  |||||||| |||||||| |||||| ||| ||||||| ||||| |||  | |||||||| ||||||||    
T  4406755 cgttcattccacacaacccaggcacaaagaagtcatattagctgcagaaacgaacgtctagctttaccaccacctatcatatgagtaaacttcactaaat 4406854  T
Q  408 gatca 412  Q
    |||||    
T  4406855 gatca 4406859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 15673552 - 15673624
Alignment:
Q  292 aaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||| |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  15673552 aaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaacgt 15673624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 411
Target Start/End: Original strand, 24749376 - 24749494
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaag 392  Q
    ||||| ||||| || ||||| ||||| |||| |||||||||||||| ||| ||||| ||||| |  |||| ||||| |||||||  ||||||||  || |    
T  24749376 aacaaccggttgtttcgttcattccagacaacccaagtacacagaagccaaattagctgcaggagcgaacatttagctttaccatgacctgtcatatatg 24749475  T
Q  393 taaactgcactaaatgatc 411  Q
     ||||||||  ||||||||    
T  24749476 aaaactgcagcaaatgatc 24749494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 23347872 - 23347807
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| | || |||||||||||||| ||||||||||    
T  23347872 cggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgt 23347807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 24 - 654
Target Start/End: Complemental strand, 16874172 - 16873543
Alignment:
Q  24 gaacacatcaaaatggaattatattaacacaac-gtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcc 122  Q
    ||||| |||||||||| ||||||||| |||||| | ||||  ||||||||||||| |||||||||    || |||||||||||||| ||||||| |||||    
T  16874172 gaacaaatcaaaatgggattatattaccacaacagaagcaatttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtgttacaaagtcc 16874073  T
Q  123 aaaacaa-agaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnag 221  Q
    |||  || |||||  |  |  ||| ||| ||||| |||||||||   | || ||||||||||||||| ||||||||||||| ||||||||        ||    
T  16874072 aaagtaagagaatctagta--gtggttagccaattcctaaacatgttataggacttgaccaccacatatgagtaccataaataaacatggctttttt-ag 16873976  T
Q  222 ctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacac 321  Q
    |||||||||||| |||||||||||| ||||  |||||||  ||| | |||| |||||||||| |||||  ||||| ||||||||||||||||||||||||    
T  16873975 ctttcagccaccctaatgataacaatttaattttatccagcaacttcgggacgtccgttacaacattattaaacaggcggttattacgttcgttccacac 16873876  T
Q  322 aatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagatta 421  Q
    |||||||||||| |||||||| ||||| ||   ||| |||| ||||| |||||||||||||| ||| |||||||||||||| ||||||||| ||||||||    
T  16873875 aatccaagtacatagaatccagattagctgttaaaaggaacatttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagatta 16873776  T
Q  422 ttcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacat 521  Q
    || |||||| |||||||| |||||| |||||||||||||| ||||||||| ||||||| |||||| |||||||| || ||||||||||||||||||||||    
T  16873775 ttaggatccacccccataaaacctagccaattgcgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtttcaacat 16873676  T
Q  522 gaccacatcccataacacatatagtcgcctcagaactgagaacaccacgagccgccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagc 621  Q
    |||| |||||  || |||| |  |||||||| |||   |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||    
T  16873675 gaccgcatcctgtatcacaaagtgtcgcctctgaatgaagaacaccacgagctgccaaatttgcttttgtgggtaaccgatcccgaagaagtctccaagc 16873576  T
Q  622 aaaaatcgagacctttaaggggacctgatgatg 654  Q
    ||||||||||||||| |||||||||||||||||    
T  16873575 aaaaatcgagaccttcaaggggacctgatgatg 16873543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 411
Target Start/End: Original strand, 44929840 - 44930081
Alignment:
Q  168 caaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctttcagccaccgtaatgataacaacttaaccttatccaataacct 267  Q
    ||||| ||||||||||||||||||||||||| |||||||||||         |||||||||||||  ||| |||||| |||||| ||| || |  |||||    
T  44929840 caaaggacttgaccaccacatctgagtaccaaaaacaaacatg-acttttatagctttcagccacactaaagataacgacttaatcttttctagcaacct 44929938  T
Q  268 ggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgttta 367  Q
    | | |  || ||||||  ||||  |||||  ||||| || ||||||||||||| || | ||||||| || | ||| |||||||| ||||| ||||| |||    
T  44929939 gag-acatcggttacaatattattaaacatacggttgttgcgttcgttccacaaaaccaaagtacaaaggagccaaattagttgtagaaacgaacgctta 44930037  T
Q  368 gttttaccaacacctgtcaagtaagtaaactgcactaaatgatc 411  Q
    | |||||||||||||||||  |||||||||||||  ||||||||    
T  44930038 gctttaccaacacctgtcatataagtaaactgcatcaaatgatc 44930081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 450
Target Start/End: Complemental strand, 44415405 - 44415255
Alignment:
Q  300 ggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactg 399  Q
    ||||||| ||||||||||||| || ||||||||| || | ||| |||| ||| ||||| ||||| |||| ||||||||||||||| |  |||||||| ||    
T  44415405 ggttattgcgttcgttccacaaaacccaagtacataggagccagattaattgtagaaacgaacgcttagctttaccaacacctgttatataagtaaattg 44415306  T
Q  400 cactaaatgatcatgaagattattcggatccgcccccatagaacctatcca 450  Q
     || | |||||||  || |||||| | ||||||||||| | | ||||||||    
T  44415305 taccagatgatcagcaacattattagcatccgcccccacaaagcctatcca 44415255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 48321839 - 48321744
Alignment:
Q  32 caaaatggaattatattaacacaac-gtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaaaa 126  Q
    |||||||||||||||||||||||||   | ||| ||||||||||||| |||||||||    || |||||||||||||| ||||||| |||||||||    
T  48321839 caaaatggaattatattaacacaacaacaacattttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtgttacagagtccaaaa 48321744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 39730327 - 39730290
Alignment:
Q  174 acttgaccaccacatctgagtaccataaacaaacatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39730327 acttgaccaccacatctgagtaccataaacaaacatgg 39730290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 41503463 - 41503399
Alignment:
Q  142 agtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaa 206  Q
    ||||||||||||||||| ||||| | || || ||||||||||||||||||||| ||| |||||||    
T  41503463 agtgattaaccaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaa 41503399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 39730271 - 39730235
Alignment:
Q  174 acttgaccaccacatctgagtaccataaacaaacatg 210  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39730271 acttaaccaccacatctgagtaccataaacaaacatg 39730235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 410
Target Start/End: Complemental strand, 34854046 - 34853935
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaact 398  Q
    ||||| |||||||| |||||||||| ||||| ||| |  |  || ||||| ||||  || |||||||||| |||||||||||||||||  |  |||||||    
T  34854046 cggttgttacgttcattccacacaacccaagaacaaaatagtcaaattagctgcatgaacgaacgtttagctttaccaacacctgtcatatctgtaaact 34853947  T
Q  399 gcactaaatgat 410  Q
    |||| |||||||    
T  34853946 gcaccaaatgat 34853935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 32353703 - 32353638
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  32353703 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 32353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 48073838 - 48073773
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  48073838 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 48073773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 3692354 - 3692426
Alignment:
Q  292 aaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||| |||||  |||| || |||||||||| ||| | ||| |||| |||||||||||||| ||||||||||    
T  3692354 aaacaaacggttgctacgctcattccacacaacccaggcacatagaagccatattagttgcataaaagaacgt 3692426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 275 - 654
Target Start/End: Original strand, 16856 - 17235
Alignment:
Q  275 tccgttacaccattaccaaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttac 374  Q
    ||||||||| |||||  || || ||| |||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||| |||||    
T  16856 tccgttacaacattattaagcaggcgattattacgtttgttccacacaatccaagtacacataatccagattagttgtagaaaggaacgtttagctttac 16955  T
Q  375 caacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatccgcccccatagaacctatccaattgcgcacctactgccacaacaa 474  Q
    |||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||| ||    
T  16956 caacacctatcaaataagtaaactgcaccaaatgatcaggaagattattaggatccacccccatagaacctagccaattgcgcacctgctgccacaataa 17055  T
Q  475 aacagtatttggacaaaataacaataaatgttcggctgtttcaacatgaccacatcccataacacatatagtcgcctcagaactgagaacaccacgagcc 574  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||   || |||| | ||||||||| ||| | ||||||||||||||     
T  17056 aacagaatttgggcaaaataaaaataaatgttcggctgtttcaacatgaccacatcttgtatcacaaagagtcgcctctgaattaagaacaccacgagct 17155  T
Q  575 gccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagcaaaaatcgagacctttaaggggacctgatgatg 654  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17156 gccaaatttgcttttgtaggtaaacgatcccgaagaagtctccaagcaaaaatcgagaccttcaaggggacctgatgatg 17235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 16131 - 16369
Alignment:
Q  32 caaaatggaattatattaacacaacgta-gcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaaaacaa- 129  Q
    ||||||||||||||||||||| ||| || |||| ||||||||||| | ||||||||||   || |||||||||||||| ||||||| ||||||||| ||     
T  16131 caaaatggaattatattaacaaaacataagcattttccaagcacagg-tgtgcctagaaaactactacaagatacaaagtgttacaaagtccaaaataag 16229  T
Q  130 agaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctttcagc 229  Q
    |||||  |   ||||| ||| ||||| |||||||||  || || ||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  16230 agaatctag--cagtggttagccaattcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaaacatgg-cttttttagctttcagc 16326  T
Q  230 caccgtaatgataacaacttaaccttatccaataacctgggga 272  Q
    |||| |||||||||||| |||| ||||||||| ||||| ||||    
T  16327 caccctaatgataacaatttaatcttatccaacaacctcggga 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 531
Target Start/End: Complemental strand, 9163800 - 9163303
Alignment:
Q  33 aaaatggaattatattaacacaacgta-gcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaaaacaa-a 130  Q
    ||||||| ||||||||| ||||||  | |||  ||||||||| ||| |||||||||    || |||||||||||||| ||||||| ||||||||| || |    
T  9163800 aaaatgggattatattaccacaacaaaagcaatttccaagcataaggtgtgcctaggaaactactacaagatacaaagtgttacaaagtccaaaataaga 9163701  T
Q  131 gaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagctttcagcc 230  Q
    ||||  |   ||||  ||| ||||| |||||||||   |||| ||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  9163700 gaatctag--cagtagttagccaattcctaaacatgttaaaggacttgaccaccacatctgagtaccataaacaaacatggttttttt-agctttcagcc 9163604  T
Q  231 accgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaatccaagt 330  Q
    ||| ||| |||||||| |||| ||||||||| ||||| ||||  ||||||||| |||||  ||||| ||||||||||||||| |||||||||||||||||    
T  9163603 accctaaagataacaatttaatcttatccaacaacctcgggacatccgttacaacattattaaacaggcggttattacgttcattccacacaatccaagt 9163504  T
Q  331 acacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatcatgaagattattcggatcc 430  Q
    ||| |||||||| ||||| || ||||| | |||||||| |||||||||||||| ||| |||||||||||||| ||||||||| |||||||||| ||||||    
T  9163503 acaaagaatccagattagctgtagaaaggcacgtttagctttaccaacacctgccaaataagtaaactgcaccaaatgatcaggaagattattaggatcc 9163404  T
Q  431 gcccccatagaacctatccaattgcgcacctactgccacaacaaaacagtatttggacaaaataacaataaatgttcggctgtttcaacatgaccacatc 530  Q
     |||||||| |||||| ||||||| |||||| ||||||||| ||||||| |||||| |||||||| || |||||||||||||| ||||||||||| ||||    
T  9163403 acccccataaaacctagccaattgtgcacctgctgccacaataaaacagaatttgggcaaaataaaaacaaatgttcggctgtctcaacatgaccgcatc 9163304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 95 - 407
Target Start/End: Complemental strand, 19824403 - 19824093
Alignment:
Q  95 ctacaagatacaaaatgttacatagtccaaaacaa-agaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgag 193  Q
    |||||||||||||| ||||||| ||||||||| || |||||  |   ||||| ||| ||||| ||||||||||  | || ||||||||||||||||||||    
T  19824403 ctacaagatacaaagtgttacaaagtccaaaataagagaatctag--cagtggttagccaattcctaaacatattataggacttgaccaccacatctgag 19824306  T
Q  194 taccataaacaaacatggnnnnnnnnagctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaa 293  Q
    || |||||||||||||||        |||||||||||||| |||||||| ||| |||| ||||||||| ||||| ||||  ||||||||| |||||  ||    
T  19824305 tatcataaacaaacatggctttttt-agctttcagccaccctaatgatatcaatttaatcttatccaacaacctcgggacatccgttacaacattattaa 19824207  T
Q  294 acaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagt 393  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||| | ||| |||||||||| |||||||||||||||||| |||||    
T  19824206 acaggcggttattacgttcgttccacacaatccaagtacatagaattcagattagttgtaaaaaggaacgtttagctttaccaacacctgtcaaataagt 19824107  T
Q  394 aaactgcactaaat 407  Q
    ||||||||| ||||    
T  19824106 aaactgcaccaaat 19824093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 15484195 - 15484077
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaag 392  Q
    ||||| ||||| |||||||| |||||||||| ||||| ||||| || ||| || || ||||  || || | ||| | |||||||||||||||||| | ||    
T  15484195 aacaatcggttgttacgttcattccacacaacccaagaacacaaaagccaaataagctgcatgaacgagctttttgctttaccaacacctgtcaaatgag 15484096  T
Q  393 taaactgcactaaatgatc 411  Q
    |||||||||| | ||||||    
T  15484095 taaactgcaccagatgatc 15484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 411
Target Start/End: Complemental strand, 18369367 - 18369249
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaag 392  Q
    ||||| ||||||||||||||  |||| || | ||||| |||||  | ||| || |||||||  || |||| ||||| |||||||||||||||||| ||||    
T  18369367 aacaaccggttattacgttcagtccatactacccaagaacacaagagccaaataagttgcatgaatgaacttttagctttaccaacacctgtcaaataag 18369268  T
Q  393 taaactgcactaaatgatc 411  Q
    |||||| ||| | ||||||    
T  18369267 taaactccaccagatgatc 18369249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 6176884 - 6176819
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| | || |||||||||||||| ||||||||||    
T  6176884 cggttattacgttcattccaaacaacccaggcacataaaagccatattagttgcataaaagaacgt 6176819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 7146775 - 7146840
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| |||||| ||||||| ||||||||||    
T  7146775 cggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcaaaaaagaacgt 7146840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 23601507 - 23601572
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  23601507 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 23601572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 49732336 - 49732239
Alignment:
Q  302 ttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactg 399  Q
    ||||| || ||||||||||||| ||  | ||| |||| ||| || ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  49732336 ttatttcgctcgttccacacaacccgggcacagagaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactg 49732239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 36708615 - 36708727
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaact 398  Q
    ||||| |||||||| |||||||| | ||||| ||||| || ||| || |||||||  || |||| ||| | ||||||||||| || ||| | |||||| |    
T  36708615 cggttgttacgttcattccacactacccaagaacacaaaagccaaataagttgcatgaacgaactttttgctttaccaacacatgccaaatgagtaaatt 36708714  T
Q  399 gcactaaatgatc 411  Q
    |||||| ||||||    
T  36708715 gcactagatgatc 36708727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 20668946 - 20669308
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaac-gtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtcca 123  Q
    |||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||    || |||||||||||||| | ||||| |||| |    
T  20668946 aacaaatcaaaatggaattatattaacacaacagtagcattttccaagcacaaggtgtgcctaggaaactactacaagatacaaagtcttacagagtcta 20669045  T
Q  124 aaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatggnnnnnnnnagct 223  Q
    ||| |||    |   | |||||||||  ||| ||||||||||  || || ||||||||||||||||||||||||||||||||||||||        |||     
T  20669046 aaataaatcgaatctagcagtgattagtcaaagcctaaacatgtcataggacttgaccaccacatctgagtaccataaacaaacatggctttttt-agcc 20669144  T
Q  224 ttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccacacaa 323  Q
    |||| ||||| |||||||||||| |||| ||||||||| ||||| |||| |||||||||| |||||  ||||| ||||||||||||||||||||||||||    
T  20669145 ttcatccaccctaatgataacaatttaatcttatccaacaacctcgggacgtccgttacaacattattaaacaggcggttattacgttcgttccacacaa 20669244  T
Q  324 tccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaa 387  Q
    ||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||    
T  20669245 tccaagtacacagaatccataatagatgcagaaaggaacgtttagctttaccaacacctgtcaa 20669308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 35957657 - 35957513
Alignment:
Q  28 acatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttacatagtccaaaac 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35957657 acatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagaattctgctacaagatacaaaatgttacatagtccaaaac 35957558  T
Q  128 aaagaataaaaaacagtgattaaccaatgcctaaacataacaaag 172  Q
    |||||| ||||| ||| |||||||||||||||| |||||||||||    
T  35957557 aaagaacaaaaagcagggattaaccaatgcctagacataacaaag 35957513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 42250068 - 42249886
Alignment:
Q  25 aacacatcaaaatggaattatattaacacaacgtagcatattccaagcacaagatgtgcctagagttctgctacaagatacaaaatgttac-atagtcca 123  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||    
T  42250068 aacacatcaaaatagaattatattaacacaacatagcttattccaagcacaagatatgcctagagttctactacaagatacaaaatgttacaaaagtcca 42249969  T
Q  124 aaacaaagaataaaaaacagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaa 206  Q
    |||||||||| |||||  || ||||||||||| |||||||||||||||  | | |||||||||||||||||||||||||||||    
T  42249968 aaacaaagaacaaaaagtagggattaaccaatacctaaacataacaaatgattagaccaccacatctgagtaccataaacaaa 42249886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 47540662 - 47540759
Alignment:
Q  302 ttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactg 399  Q
    ||||| ||||| |||||||||| ||| | ||| |||| ||| || ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  47540662 ttatttcgttcattccacacaacccaggcacagagaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaaataagtaaactg 47540759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 411
Target Start/End: Original strand, 53809582 - 53809687
Alignment:
Q  306 tacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaa 405  Q
    ||||||| |||||||||| |||||||||||  | ||| || |||||||  || || ||||||  ||||||| |||||||||  || ||||||||||| ||    
T  53809582 tacgttcattccacacaacccaagtacacaatagccaaataagttgcatgaacgagcgtttaactttaccaccacctgtcatatacgtaaactgcaccaa 53809681  T
Q  406 atgatc 411  Q
    ||||||    
T  53809682 atgatc 53809687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 2631125 - 2631197
Alignment:
Q  292 aaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||| ||||| ||||| || |||||||||| ||| | ||| |||| |||||||||||||| ||||||||||    
T  2631125 aaacaaacggttgttacgctcattccacacaacccatgcacatagaagccatattagttgcataaaagaacgt 2631197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 4641071 - 4640975
Alignment:
Q  312 cgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatg 408  Q
    ||||||| |||| ||||||||||| || ||| ||||| ||||  || || ||||||  |||||||||||||||||  | |||||||||||| |||||    
T  4641071 cgttccagacaacccaagtacacataagccaaattagctgcaagaatgatcgtttatctttaccaacacctgtcatatgagtaaactgcaccaaatg 4640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 399
Target Start/End: Complemental strand, 3130375 - 3130285
Alignment:
Q  309 gttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactg 399  Q
    |||| |||||||||| ||| | ||| |||| ||| || ||||||| |||||||||| |||  ||| || |||||||||| |||||||||||    
T  3130375 gttcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtctagacttagcaccacctgtcaactaagtaaactg 3130285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 411
Target Start/End: Original strand, 50451807 - 50451925
Alignment:
Q  293 aacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaag 392  Q
    ||||| || ||||||||||||||||| || | ||||| |||||  | ||| || || ||||  || |||| ||||| ||||||||||| |||||| | ||    
T  50451807 aacaaacgattattacgttcgttccaaactacccaagaacacaagagccaaataagctgcatgaacgaacttttagctttaccaacacttgtcaaatgag 50451906  T
Q  393 taaactgcactaaatgatc 411  Q
    ||||||||| || ||||||    
T  50451907 taaactgcattagatgatc 50451925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 623
Target Start/End: Original strand, 15740242 - 15740279
Alignment:
Q  586 ttttgtaggtaaccgatctcggagaagtctccaagcaa 623  Q
    ||||||||||||||||||||| | ||||||||||||||    
T  15740242 ttttgtaggtaaccgatctcgcaaaagtctccaagcaa 15740279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 23873882 - 23873817
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  23873882 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 23873817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 55298357 - 55298422
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  55298357 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 55298422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 8487387 - 8487287
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaact 398  Q
    ||||||||||||||  |||| |||| ||| | ||| | || |||||||||||||| |||||||||| |||    |||| |||||||||| ||||| ||||    
T  8487387 cggttattacgttcagtccaaacaacccaggcacataaaagccatattagttgcataaaagaacgtctagcaacaccaccacctgtcaaataagtgaact 8487288  T
Q  399 g 399  Q
    |    
T  8487287 g 8487287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 27083349 - 27083461
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaact 398  Q
    ||||| |||||||| |||||||||| |||||||||||| |  || ||||| ||||| || |||||||||| |||||||||||||||||  ||||||||||    
T  27083349 cggttgttacgttcattccacacaacccaagtacacagtagtcaaattagctgcaggaacgaacgtttagctttaccaacacctgtcatataagtaaact 27083448  T
Q  399 gcactaaatgatc 411  Q
    |||| ||||||||    
T  27083449 gcaccaaatgatc 27083461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 220 - 409
Target Start/End: Original strand, 7555102 - 7555291
Alignment:
Q  220 agctttcagccaccgtaatgataacaacttaaccttatccaataacctggggatgtccgttacaccattaccaaacaagcggttattacgttcgttccac 319  Q
    |||||||||||| | ||| |||||||| |||| |||||| |  || |||| ||| || |||| | |||||  |||||  ||||||||||||||||||| |    
T  7555102 agctttcagccatcctaacgataacaatttaatcttatcaagcaatctggtgatatcggttagagcattattaaacagacggttattacgttcgttccgc 7555201  T
Q  320 acaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatga 409  Q
    | ||  |||||||| ||||  || ||||| |||||||| |||||| ||| |||||||||| ||||||  |||||||| ||||| ||||||    
T  7555202 aaaactcaagtacaaagaagtcagattagctgcagaaacgaacgtctagctttaccaacatctgtcatataagtaaattgcaccaaatga 7555291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 6900630 - 6900707
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttacca 376  Q
    ||||| || ||||||||||| |||| |||||||||||||| ||| ||||| ||||| || || ||||||| |||||||    
T  6900630 cggttgtttcgttcgttccatacaacccaagtacacagaagccaaattagctgcaggaatgagcgtttagctttacca 6900707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 656
Target Start/End: Original strand, 7555457 - 7555538
Alignment:
Q  575 gccaaatttgcttttgtaggtaaccgatctcggagaagtctccaagcaaaaatcgagacctttaaggggacctgatgatgtc 656  Q
    |||| |||||||||||||||||| |||||  | || || | ||||||||| | ||||||||| ||||| |||||||||||||    
T  7555457 gccagatttgcttttgtaggtaaacgatcctgaaggagccgccaagcaaagaccgagaccttcaagggaacctgatgatgtc 7555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 16421422 - 16421350
Alignment:
Q  292 aaacaagcggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||| ||||| ||||| || |||||||||| ||||  ||| |||| |||||||||||||| ||||||||||    
T  16421422 aaacaaacggttgttacgctcattccacacaacccaaacacatagaagccatattagttgcataaaagaacgt 16421350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 36897695 - 36897773
Alignment:
Q  308 cgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtca 386  Q
    ||||||||||  |||| |||||||||||||| ||| ||||| ||||| || |||||||||  |||||||  ||||||||    
T  36897695 cgttcgttccgtacaacccaagtacacagaagccaaattagctgcaggaatgaacgtttaactttaccaggacctgtca 36897773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 30501702 - 30501815
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgtttagttttaccaacacctgtcaagtaagtaaact 398  Q
    |||||||||||||| ||||||| || ||||| ||| |||| ||| |||| |||||  ||  |||| |||  |||||||||||||  ||  | ||||||||    
T  30501702 cggttattacgttcattccacaaaacccaagcacaaagaagccagattaattgcaagaacaaacgcttaactttaccaacacctaccatatgagtaaact 30501801  T
Q  399 gcactaaatgatca 412  Q
    |||| |||||||||    
T  30501802 gcaccaaatgatca 30501815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 579 - 648
Target Start/End: Original strand, 37718861 - 37718930
Alignment:
Q  579 aatttgcttttgtaggtaaccgatctcggagaagtctccaagcaaaaatcgagacctttaaggggacctg 648  Q
    |||||| ||| |||||||| ||||| ||||| || | |||||||||||| || ||||||||||| |||||    
T  37718861 aatttgatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctg 37718930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 23942111 - 23942163
Alignment:
Q  359 gaacgtttagttttaccaacacctgtcaagtaagtaaactgcactaaatgatc 411  Q
    |||| ||||| |||||||||||||||||  | |||||||||||| ||||||||    
T  23942111 gaacttttagctttaccaacacctgtcatatgagtaaactgcaccaaatgatc 23942163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 30501551 - 30501615
Alignment:
Q  147 ttaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaacatgg 211  Q
    ||||||||||||||||||   ||| |  |||||||||||| | ||||||||| ||||||||||||    
T  30501551 ttaaccaatgcctaaacaagccaaggggcttgaccaccacctatgagtaccaaaaacaaacatgg 30501615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 6267463 - 6267527
Alignment:
Q  141 cagtgattaaccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaa 205  Q
    |||||||||||||||||||||||| | || |  ||||||||||||||||||||| ||| ||||||    
T  6267463 cagtgattaaccaatgcctaaacaaaccatatgacttgaccaccacatctgagttccaaaaacaa 6267527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 11235017 - 11234962
Alignment:
Q  151 ccaatgcctaaacataacaaagtacttgaccaccacatctgagtaccataaacaaa 206  Q
    |||||||| ||||| | ||||| ||||||||||||||||||||| ||| |||||||    
T  11235017 ccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaa 11234962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 33547606 - 33547671
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| ||| |||||||||| ||||||||||    
T  33547606 cggttattacgttcattccaaacaacccaggcacaaagaagccagattagttgcataaaagaacgt 33547671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 43627233 - 43627298
Alignment:
Q  299 cggttattacgttcgttccacacaatccaagtacacagaatccatattagttgcagaaaagaacgt 364  Q
    |||||||||||||| ||||| |||| ||| | ||| |||| |||||| ||||||| ||||||||||    
T  43627233 cggttattacgttcattccaaacaacccaggcacaaagaagccatataagttgcataaaagaacgt 43627298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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