View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19936_high_1 (Length: 466)
Name: NF19936_high_1
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19936_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 44 - 453
Target Start/End: Original strand, 41757257 - 41757666
Alignment:
| Q |
44 |
gctgcttctctttaatttccaggggccagagacatcaaagtcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagag |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757257 |
gctgcttctctttaatttccaggggccagagacatcaaagtcagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagag |
41757356 |
T |
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| Q |
144 |
ggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcag |
243 |
Q |
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| T |
41757357 |
ggattcaagcctgcaaaggatgtatctattccagaaaccaatcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcag |
41757456 |
T |
|
| Q |
244 |
ttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtacct |
343 |
Q |
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| T |
41757457 |
ttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtacct |
41757556 |
T |
|
| Q |
344 |
tccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaata |
443 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41757557 |
tccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaata |
41757656 |
T |
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| Q |
444 |
tacacaggtt |
453 |
Q |
| |
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|||||||||| |
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| T |
41757657 |
tacacaggtt |
41757666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 85 - 453
Target Start/End: Original strand, 41765381 - 41765749
Alignment:
| Q |
85 |
cagttccaaacttgtacaaaaattcaatccgagcgctttgcaatgcgaacacatcagagggattcaagcctgcaaaggatgtatctattccagaaaccaa |
184 |
Q |
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||||||||||||||||||| ||||| || || ||| |||||||||| ||||| ||||||||||||||||| | ||| ||||||||||||||||||| ||| |
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| T |
41765381 |
cagttccaaacttgtacaagaattcgattcgtgcgttttgcaatgccaacacctcagagggattcaagccagtaaaagatgtatctattccagaaatcaa |
41765480 |
T |
|
| Q |
185 |
tcttcaaaccggtacaatacatggtattgttggcgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttagg |
284 |
Q |
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| ||| |||||| | ||| ||| | || ||||||| ||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| |
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| T |
41765481 |
tgttcgaaccggcataattgatgatcttcttggcggaccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattagg |
41765580 |
T |
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| Q |
285 |
cctgttctacttgaacattgggaacacaaagatgaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagca |
384 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41765581 |
aatgttctacttgaacattgggaacacaaagatgaagatattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagca |
41765680 |
T |
|
| Q |
385 |
agttctgtctttgtcctagtgggtacgaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
453 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41765681 |
agttttgtctttgtcctagtgggtgggaggttgcaagtccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
331 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
427 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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