View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19936_high_5 (Length: 244)

Name: NF19936_high_5
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19936_high_5
NF19936_high_5
[»] chr3 (15 HSPs)
chr3 (1-229)||(11153744-11153985)
chr3 (108-226)||(11131629-11131747)
chr3 (108-226)||(8860634-8860752)
chr3 (108-226)||(10888654-10888772)
chr3 (126-226)||(11149457-11149557)
chr3 (124-226)||(11160620-11160722)
chr3 (8-79)||(11149589-11149660)
chr3 (124-199)||(11162748-11162823)
chr3 (8-76)||(11131801-11131869)
chr3 (33-76)||(8860537-8860580)
chr3 (128-217)||(10031359-10031448)
chr3 (128-201)||(10126284-10126357)
chr3 (128-201)||(10260054-10260127)
chr3 (128-201)||(10662882-10662955)
chr3 (18-52)||(11153975-11154009)
[»] chr7 (1 HSPs)
chr7 (155-226)||(22827528-22827599)
[»] chr4 (1 HSPs)
chr4 (159-226)||(8438884-8438951)
[»] chr6 (1 HSPs)
chr6 (125-173)||(31680395-31680443)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11153985 - 11153744
Alignment:
Q  1 tccctgcataatttgttcttcttggtagtctaaacgaagattccctgcataaaggtaccttaccaaacttgttttcaacctttcaagctatataccttgc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11153985 tccctgcataatttgtgcttcttggtagtctaaacgaagattccctgcataaaggtaccttaccaaacttgttttca-cctttcaagctatataccttgc 11153887  T
Q  101 cttcgttaa--------------aacaaccccactttgaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgctt 186  Q
    |||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11153886 cttcgttaatcaacattcatcaaaacaaccccactttgaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgctt 11153787  T
Q  187 gacaaactaacttcaatagagtttcttgatttcatcaacatca 229  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  11153786 gacaaactaacttcaatagagtttcgtgatttcatcaacatca 11153744  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 11131747 - 11131629
Alignment:
Q  108 aaaacaaccccactttgaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagag 207  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||  |||    
T  11131747 aaaacaaccccgcttagaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgacaaactaacttcaactgag 11131648  T
Q  208 tttcttgatttcatcaaca 226  Q
    |||| ||||||||||||||    
T  11131647 tttcgtgatttcatcaaca 11131629  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 8860634 - 8860752
Alignment:
Q  108 aaaacaaccccactttgaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagag 207  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||  |||    
T  8860634 aaaacaaccccgcttagaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaaccgag 8860733  T
Q  208 tttcttgatttcatcaaca 226  Q
    |||| ||||||||||||||    
T  8860734 tttcgtgatttcatcaaca 8860752  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 10888654 - 10888772
Alignment:
Q  108 aaaacaaccccactttgaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagag 207  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||  |||    
T  10888654 aaaacaaccccgcttagaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaactgag 10888753  T
Q  208 tttcttgatttcatcaaca 226  Q
    |||| ||||||||||||||    
T  10888754 tttcgtgatttcatcaaca 10888772  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 11149557 - 11149457
Alignment:
Q  126 aaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcttgatttcatcaac 225  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||   |||||||| ||||||||||||  ||||||| |||||||||||||    
T  11149557 aaagatggctgcaactttggttggaggtgcatttctctctgcttctgtccaaagcatgcttgaccaactaacttcaactgagtttcgtgatttcatcaac 11149458  T
Q  226 a 226  Q
    |    
T  11149457 a 11149457  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 11160722 - 11160620
Alignment:
Q  124 gaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcttgatttcatca 223  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||||| | |||  | |||||||||||| ||||||  ||||||| |||||||||||    
T  11160722 gaaaagattgctgcaactttggttggaggtgcatttctatctgcttctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatttcatca 11160623  T
Q  224 aca 226  Q
    |||    
T  11160622 aca 11160620  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 11149660 - 11149589
Alignment:
Q  8 ataatttgttcttcttggtagtctaaacgaagattccctgcataaaggtaccttaccaaacttgttttcaac 79  Q
    ||||||||| || ||| || || | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  11149660 ataatttgtgctccttagttgtatcaacgaagtttccctgcataaaggtaccttaccaaacttgttttcaac 11149589  T

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Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 11162823 - 11162748
Alignment:
Q  124 gaaaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaactt 199  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||  ||||| ||||||||||||    
T  11162823 gaaaagatggctgcaactttggttggaggtgcatttctatctgcttctattcaaaccatgcttaacaaactaactt 11162748  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 11131869 - 11131801
Alignment:
Q  8 ataatttgttcttcttggtagtctaaacgaagattccctgcataaaggtaccttaccaaacttgttttc 76  Q
    ||||||||| || ||| ||| ||| ||||||| ||||||| ||||||||||||||||||||||||||||    
T  11131869 ataatttgtgctccttagtaatctcaacgaagtttccctgtataaaggtaccttaccaaacttgttttc 11131801  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 8860537 - 8860580
Alignment:
Q  33 aacgaagattccctgcataaaggtaccttaccaaacttgttttc 76  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  8860537 aacgaagtttccctgcataaaggtaccttaccaaacttgttttc 8860580  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 10031359 - 10031448
Alignment:
Q  128 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcttgatt 217  Q
    ||||||| ||| |||||||||||||||||||||| |||||| || | | ||| ||  | ||||||||||||||||  ||||||| |||||    
T  10031359 agatggctgcagctttggttggaggtgcatttctgtctgctactcttcaaaccttaatggacaaactaacttcaaccgagtttcgtgatt 10031448  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 10126284 - 10126357
Alignment:
Q  128 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttca 201  Q
    ||||||| ||| |||||||||||||||| ||||| ||||||||||| | ||| ||  | |||||||||||||||    
T  10126284 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttca 10126357  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 10260054 - 10260127
Alignment:
Q  128 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttca 201  Q
    ||||||| ||| |||||||||||||||| ||||| ||||||||||| | ||| ||  | |||||||||||||||    
T  10260054 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttca 10260127  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Original strand, 10662882 - 10662955
Alignment:
Q  128 agatggcagcaactttggttggaggtgcatttctctctgcttctgtccgaacattgcttgacaaactaacttca 201  Q
    ||||||| ||| |||||||||||||||| ||||| ||||||||||| | ||| ||  | |||||||||||||||    
T  10662882 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttca 10662955  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 11154009 - 11153975
Alignment:
Q  18 cttcttggtagtctaaacgaagattccctgcataa 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  11154009 cttcttggtagtctaaacgaagtttccctgcataa 11153975  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 22827528 - 22827599
Alignment:
Q  155 catttctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcttgatttcatcaaca 226  Q
    ||||||||||||||||||  | |||| | ||||||||||||||||||| |||||||  ||||||||||||||    
T  22827528 catttctctctgcttctgatcaaacactacttgacaaactaacttcaacagagtttggtgatttcatcaaca 22827599  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 8438884 - 8438951
Alignment:
Q  159 tctctctgcttctgtccgaacattgcttgacaaactaacttcaatagagtttcttgatttcatcaaca 226  Q
    ||||||||||||||| | |||| | ||||||||||||||||||| |||||||  ||||||||||||||    
T  8438884 tctctctgcttctgttcaaacactacttgacaaactaacttcaacagagtttggtgatttcatcaaca 8438951  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 31680443 - 31680395
Alignment:
Q  125 aaaagatggcagcaactttggttggaggtgcatttctctctgcttctgt 173  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  31680443 aaaaaatggctgcaactttggtgggaggtgcatttctctctgcttctgt 31680395  T

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