View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19936_low_2 (Length: 429)
Name: NF19936_low_2
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19936_low_2 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 14193217 - 14193005
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagatgaacccatgaatgacaaaaggttcgaatggcaa |
112 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||||||||||| |||||||| ||| ||||||| |||||||| |
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| T |
14193217 |
catcaaaaccacaacaaccacctcttatggtgccaacaccaatagctgcgcattgtaaactcaagatgaccccatgaaagactaaaggtttgaatggcag |
14193118 |
T |
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| Q |
113 |
gaaccaagcaaaactatgattgagggaaattacacaccagttaagaaataacaggagaacacccgacactaacccaaagtttacaaagaaggactcccaa |
212 |
Q |
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| T |
14193117 |
gaaccaagcaaatatatgattgagggaaa--acacaccacctaagaaatacaaggagaacaacccacactaacccaaagtctacaaagaaggtctccgaa |
14193020 |
T |
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| Q |
213 |
acaacaaccaggcca |
227 |
Q |
| |
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|||||||| |||||| |
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| T |
14193019 |
acaacaactaggcca |
14193005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 25646965 - 25646753
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagatgaacccatgaatgacaaaaggttcgaatggcaa |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||| ||| ||||||| |||||||| |
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| T |
25646965 |
catcaaaagcacaacaaccaccccttatggtgccaacaccaatagccgctcattgtaaactcacgatgaccccatgaaagactaaaggtttgaatggcag |
25646866 |
T |
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| Q |
113 |
gaaccaagcaaaactatgattgagggaaattacacaccagttaagaaataacaggagaacacccgacactaacccaaagtttacaaagaaggactcccaa |
212 |
Q |
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| T |
25646865 |
aaaccaagaaaatctatgattgagggaaa--acacaccacctaagaaatacaaggagaacaacccacactaacccaaagtctacaaagaaggtctctaaa |
25646768 |
T |
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| Q |
213 |
acaacaaccaggcca |
227 |
Q |
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|||||||| |||||| |
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| T |
25646767 |
acaacaactaggcca |
25646753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 36077 - 35863
Alignment:
| Q |
13 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagatgaacccatgaatgacaaaaggttcgaatggcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |
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| T |
36077 |
catcaaaaccacaacaaccaccccttatggtgccaacaccaataacccctcattgtaaactcaagaagaccccatgaaagacaaaaggttcgaatggcag |
35978 |
T |
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| Q |
113 |
gaaccaagcaaaactatgattgagggaaattacacaccagttaagaaataacaggagaacacccgacactaacccaaagtttacaaagaaggactcccaa |
212 |
Q |
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|||||||||||| ||| || ||||||||| |||||||| ||||||||| |||||| || | |||||||| |||||| ||||||||| | |||| || |
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| T |
35977 |
gaaccaagcaaatctaagaatgagggaaa--acacaccacctaagaaatacaaggagagcaatccacactaactcaaagtctacaaagaa-gcctccaaa |
35881 |
T |
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| Q |
213 |
acaacaaccaggccacgg |
230 |
Q |
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|||||||| | ||||||| |
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| T |
35880 |
acaacaactatgccacgg |
35863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 313 - 355
Target Start/End: Original strand, 8523227 - 8523269
Alignment:
| Q |
313 |
atagagaaacatggaagatactatcaggaggttatcaaatgag |
355 |
Q |
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| T |
8523227 |
atagagaaacatggaagatactatcaggaggttatgaaatgag |
8523269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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