View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19936_low_3 (Length: 402)
Name: NF19936_low_3
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19936_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 27066153 - 27065778
Alignment:
| Q |
16 |
caaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatt |
115 |
Q |
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| T |
27066153 |
caaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatt |
27066054 |
T |
|
| Q |
116 |
tcttttgctagttataataaaactactgcttcaactaactctcttagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccggg |
215 |
Q |
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| T |
27066053 |
tcttttgctagttataataaaactactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttccggg |
27065954 |
T |
|
| Q |
216 |
agaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgcc |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065953 |
agaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaattgcc |
27065854 |
T |
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| Q |
316 |
atttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttcgatgaacaaaatgatg |
391 |
Q |
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| T |
27065853 |
atttgcatcttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatg |
27065778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 79 - 379
Target Start/End: Complemental strand, 27079810 - 27079507
Alignment:
| Q |
79 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactgcttcaactaactctcttagtgatagtggtagt |
175 |
Q |
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|||||| || ||||||||||| || || |||||||||||||||||| |||||| ||| | || || ||||||| || ||| ||||||| |||| |||| |
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| T |
27079810 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
27079711 |
T |
|
| Q |
176 |
ttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgc |
275 |
Q |
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||||||||||| |||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||| ||||| | |||||||||||||| |
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| T |
27079710 |
ttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgc |
27079611 |
T |
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| Q |
276 |
caaggtcgtttttgcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattcttc |
375 |
Q |
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| T |
27079610 |
caaggtcgtttttaccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttgaagcaagtttttaaggtgtctgagaattcctc |
27079511 |
T |
|
| Q |
376 |
gatg |
379 |
Q |
| |
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|||| |
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| T |
27079510 |
gatg |
27079507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 189 - 372
Target Start/End: Complemental strand, 27053538 - 27053355
Alignment:
| Q |
189 |
tggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgttttt |
288 |
Q |
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||||| |||| |||||||||||||| || | ||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| || ||||||||||| |
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| T |
27053538 |
tggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgttttt |
27053439 |
T |
|
| Q |
289 |
gcctcgttccattttgaccaaattgccatttgcatcctctaagttgaatgagatgaagcaggtttttaaggtgtccgagaattc |
372 |
Q |
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||| ||||||||||||| ||||||||| |||||||| ||||||||||| | |||||||| ||||| |||||||| || ||||| |
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| T |
27053438 |
gccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattc |
27053355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 14866036 - 14866157
Alignment:
| Q |
167 |
agtggtagtttggcaaaaaacatggttcaacctggtaagtttttccgggagaaaatgttgaaggaagggacagttatgcctatgccagatataagggata |
266 |
Q |
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||||||||||||| |||||| |||| | |||||||||||||| | |||||||||||||| ||||| || || ||||||||||| ||||| || |||| |
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| T |
14866036 |
agtggtagtttggtaaaaaaatgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagata |
14866135 |
T |
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| Q |
267 |
aattaccgccaaggtcgttttt |
288 |
Q |
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||||||| |||||||||||| |
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| T |
14866136 |
aattacctaaaaggtcgttttt |
14866157 |
T |
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