View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19936_low_5 (Length: 254)
Name: NF19936_low_5
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19936_low_5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0821 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 11472496 - 11472737
Alignment:
| Q |
13 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472496 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
11472595 |
T |
|
| Q |
113 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472596 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
11472695 |
T |
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| Q |
213 |
taatgcaccaagtacttttatgagactcatgaaccatgtctt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472696 |
taatgcaccaagtacttttatgagactcatgaaccatgtctt |
11472737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 21462872 - 21462631
Alignment:
| Q |
13 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21462872 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
21462773 |
T |
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| Q |
113 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21462772 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
21462673 |
T |
|
| Q |
213 |
taatgcaccaagtacttttatgagactcatgaaccatgtctt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21462672 |
taatgcaccaagtacttttatgagactcatgaaccatgtctt |
21462631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 249
Target Start/End: Original strand, 21799670 - 21799844
Alignment:
| Q |
75 |
tggtgcatgtttattttctaaaattgatttgaaaagtggctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatat |
174 |
Q |
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|||||| ||| | ||||| |||||||| || |||||||| ||||| ||||| ||||||| || |||||||| |||||||| || |||||||| |||| | |
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| T |
21799670 |
tggtgcgtgtgtcttttccaaaattgacttaaaaagtggttatcatcaaattcgaattagagaaggggatgagtggaaaacagcctttaaaactaaattt |
21799769 |
T |
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| Q |
175 |
ggtttgtatgagtggatggttatgccgtttggtttaactaatgcaccaagtacttttatgagactcatgaaccat |
249 |
Q |
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|| | ||||||||| | || ||||| || ||| |||| ||||| || |||||||||||| || | ||||||||| |
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| T |
21799770 |
ggcctttatgagtggctagtgatgccattcggtctaaccaatgcccctagtacttttatgcgattgatgaaccat |
21799844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 13183110 - 13182869
Alignment:
| Q |
13 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13183110 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
13183011 |
T |
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| Q |
113 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13183010 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
13182911 |
T |
|
| Q |
213 |
taatgcaccaagtacttttatgagactcatgaaccatgtctt |
254 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13182910 |
taatgcgccaagtacttttatgagactcatgaaccatgtctt |
13182869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 13959891 - 13959656
Alignment:
| Q |
16 |
attaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtggct |
115 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
13959891 |
attaccattaagtataggcatcctattcctaggctagatgacttacttgatgaattgtttggtgcatgcttattttctaaaattgatttgaaaagtgggt |
13959792 |
T |
|
| Q |
116 |
atcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaa |
215 |
Q |
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| || ||||| | || ||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||| |||||||||| ||||| ||||||| |
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| T |
13959791 |
accatcaaattcggataagggagggggacgagtggaaaacagctttcaaaacaaaatatggcttatatgagtggttggttatgccatttgggctaactaa |
13959692 |
T |
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| Q |
216 |
tgcaccaagtacttttatgagactcatgaaccatgt |
251 |
Q |
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|||||| |||||||| |||||||| ||||||||||| |
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| T |
13959691 |
tgcacctagtactttcatgagactaatgaaccatgt |
13959656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 15384847 - 15385080
Alignment:
| Q |
16 |
attaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtggct |
115 |
Q |
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|
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
15384847 |
attaccattaagtataggcatcctattcctaggctagatgacttacttgatgaattgtttggtgcatgcttattttctaaaattgatttgaaaagtgggt |
15384946 |
T |
|
| Q |
116 |
atcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaa |
215 |
Q |
| |
|
| || ||||| | || ||||||||||| || |||||||| ||||| |||||||||||||| || ||||||||| |||||||||| ||||| ||||||| |
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| T |
15384947 |
accatcaaattcggataagggagggggacgagtggaaaacagctttcaaaacaaaatatggcttatatgagtggttggttatgccatttgggctaactaa |
15385046 |
T |
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| Q |
216 |
tgcaccaagtacttttatgagactcatgaaccat |
249 |
Q |
| |
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|||||| |||||||| |||||||| ||||||||| |
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| T |
15385047 |
tgcacctagtactttcatgagactaatgaaccat |
15385080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 18779058 - 18778858
Alignment:
| Q |
13 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18779058 |
aatattaccattaagtatagacatccaatccctaggctagatgacttacttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtg |
18778959 |
T |
|
| Q |
113 |
gctatcaccaaataagaattagggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
212 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18778958 |
gctatcaccaaattagaattatggagggggatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaac |
18778859 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
|
|
| T |
18778858 |
t |
18778858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 16934315 - 16934176
Alignment:
| Q |
61 |
cttgatgaattgtttggtgcatgtttattttctaaaattgatttgaaaagtggctatcaccaaataagaattagggagggggatgaatggaaaactgctt |
160 |
Q |
| |
|
|||||||| ||| |||| ||||||| ||||| ||||| |||||||| ||||| ||| |||| || | || | || | |||||||||||||| | | |
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|
| T |
16934315 |
cttgatgagttgcatggttcatgtttgttttcaaaaatagatttgaagagtggatattaccagatccgcatgaaagaaagtgatgaatggaaaacaacat |
16934216 |
T |
|
| Q |
161 |
ttaaaacaaaatatggtttgtatgagtggatggttatgcc |
200 |
Q |
| |
|
||||||| ||||||||||| ||||||||| |||| ||||| |
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| T |
16934215 |
ttaaaactaaatatggtttatatgagtggttggtgatgcc |
16934176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0821 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0821
Description:
Target: scaffold0821; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 3441 - 3346
Alignment:
| Q |
142 |
gatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaatgcaccaagtacttttatgaga |
237 |
Q |
| |
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|||||||||||||| || |||||||| || | ||| || ||||||||| | |||||||| |||||||| ||||||||||| || ||||| |||||| |
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|
| T |
3441 |
gatgaatggaaaacggcatttaaaactaagtttggattatatgagtggttagttatgccttttggtttgactaatgcacctagcactttcatgaga |
3346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 32705874 - 32705959
Alignment:
| Q |
142 |
gatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaatgcaccaagtac |
227 |
Q |
| |
|
||||||||||| ||||| || ||||||| | ||||||| ||||| |||| || ||||| ||||| ||| ||||||| |||||||| |
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| T |
32705874 |
gatgaatggaagactgcattcaaaacaagagatggtttatatgaatggacagtgatgccctttgggttatctaatgctccaagtac |
32705959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 2793025 - 2792941
Alignment:
| Q |
142 |
gatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaatgcaccaagta |
226 |
Q |
| |
|
||||||||||| ||||| || ||||||| | ||||||| ||||| |||| || ||||| ||||| ||| ||||||| ||||||| |
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|
| T |
2793025 |
gatgaatggaagactgcattcaaaacaagagatggtttatatgaatggacagtgatgccctttgggttatctaatgctccaagta |
2792941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 14474066 - 14473974
Alignment:
| Q |
142 |
gatgaatggaaaactgcttttaaaacaaaatatggtttgtatgagtggatggttatgccgtttggtttaactaatgcaccaagtacttttatg |
234 |
Q |
| |
|
||||||||||| ||||| || ||||||| | |||| || ||||| |||| || ||||| ||||| ||| ||||||| |||||||| |||||| |
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| T |
14474066 |
gatgaatggaagactgcattcaaaacaagagatggcttatatgaatggacagtgatgccctttgggttatctaatgctccaagtacctttatg |
14473974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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