View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19936_low_8 (Length: 232)
Name: NF19936_low_8
Description: NF19936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19936_low_8 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 42570640 - 42570862
Alignment:
| Q |
10 |
aagaatattatggtgagtttagtacctttaactggttgtttatgctatgttactcatttagcattggttcattattttaataggagcattttgatagttc |
109 |
Q |
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| T |
42570640 |
aagaaaattatggtgagtttagtacctttaactggttgtttatgctatgttactcatttagcattggttcattattttaataggagcatttcgatagttc |
42570739 |
T |
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| Q |
110 |
tgttttaggcatgcattaaaatcttggataagtagcacataactaagttctgaaaagaatgtgcctgtttcaaagaagataaccggtccaacttataatt |
209 |
Q |
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| T |
42570740 |
tgttttaggcatgcattaaaatcttggataagtagcacaaaactaagttctgaaaagaatgtgcctgtttcaaggaagataaccggtgcaacttataatt |
42570839 |
T |
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| Q |
210 |
tgatagttctgtttgagtccaat |
232 |
Q |
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| T |
42570840 |
tgatagttctgtttgagtccaat |
42570862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 42577832 - 42577952
Alignment:
| Q |
16 |
attatggtgagtttagtacctttaactggttgtttatgctatgttactcattt-agcattggttcattattttaataggagcattttgatagttctgttt |
114 |
Q |
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| T |
42577832 |
attatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatttgttcattatttttaccggagcatttcgatagttcttttt |
42577931 |
T |
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| Q |
115 |
taggcatgcattaaaatcttg |
135 |
Q |
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| T |
42577932 |
gatgcatgcattaaaatcttg |
42577952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 42573018 - 42573070
Alignment:
| Q |
16 |
attatggtgagtttagtacctttaactggttgtttatgctatgttactcattt |
68 |
Q |
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| T |
42573018 |
attatggtgagtttagttccttgaactggttgtttgtgctatgctactcattt |
42573070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 42578045 - 42578083
Alignment:
| Q |
194 |
ggtccaacttataatttgatagttctgtttgagtccaat |
232 |
Q |
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| T |
42578045 |
ggtccagcttataagttgatagttctgtttgagtccaat |
42578083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 42577965 - 42578010
Alignment:
| Q |
134 |
tggataagtagcacataactaagttctgaaaagaatgtgcctgttt |
179 |
Q |
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| T |
42577965 |
tggataagcagcactaaactaagttatgaaaagaatgtgcctgttt |
42578010 |
T |
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