View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_high_1 (Length: 608)
Name: NF19937_high_1
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 37975683 - 37975091
Alignment:
| Q |
1 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatgatatggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37975683 |
cacagatattatgcacatgcaaaaagctgtgcccgtgttattgcaacaagaaacatgcaggaaaagctaatctataatgtaatgatcgagatggtatggt |
37975584 |
T |
|
| Q |
101 |
ttatagcttagattagattctgtgatttattaggcacattacaaagttgacnnnnnnnnnnnnnnnnnnnnnntagggactggtggaataattggtgctt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37975583 |
ttatggcttagattagattctgtgatttattaggcacattacaaagttgacaaaagaaaagaaaaaagaagaatagggactggtggaataattggtgctt |
37975484 |
T |
|
| Q |
201 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaat |
300 |
Q |
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| T |
37975483 |
aagttcgaagaaaacttattatttctctctctgtctttttgattttgtaatgtaggatagatgaagaaatgttactatgtttttgttagttagtgaaaat |
37975384 |
T |
|
| Q |
301 |
gaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagcagtagatgtttgatgggaagaataataaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37975383 |
gaaacataacattgtgtttagggaatctatattggttgaataaagagttggaatccactcaaaattaagtagtagatgtttgatgggaagaataataaca |
37975284 |
T |
|
| Q |
401 |
tagatatttggaatagagacattaacatgactccatccaacctttgacaacccctctcatatgttaatt--tttgtgtgtcggacgtggaaagatggagt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
37975283 |
tagatatttggaatagagacattaacatgactccatccaacctttgacaacccctctcatatgttaatttgtgtgtgtgtcggacgtggaaagatggagt |
37975184 |
T |
|
| Q |
499 |
ccaccagatttatgattgatgtctatgtttataaactaagcttttcaaaccttcaattattgaggtaaaagttgaataccatttgtcatcttt |
591 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37975183 |
ccaccagatttatgattgatgtctatgtttataaactaagcttttcaaaccttcaattattgaggtaaaagttgaataccatttgtcatcttt |
37975091 |
T |
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