View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_high_11 (Length: 237)
Name: NF19937_high_11
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 24541836 - 24542036
Alignment:
| Q |
19 |
atcgatacctttttataaaaatataataaaatcgatgcttttttgtnnnnnnnntataattcttgtattctgtttattgacatgtttgataaaggtgcaa |
118 |
Q |
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| T |
24541836 |
atcgatacctttttataaaaatataataaattcgatgcttttttgtaaaaag--tataattattgtattctgtttattgacatgtttcataaaggtgcaa |
24541933 |
T |
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| Q |
119 |
attctgaaggacatctttgcaattctcaaaattatttctttctctgtctttattttgtcgatgtgatgcctccattaaatacaattaattctgaagatta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24541934 |
attctgaaggacatctttgcaattctcaaaattatttctttctctgtctttattttgtccatgtgatgcctccattaaatacaattaattctgaagatta |
24542033 |
T |
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| Q |
219 |
tga |
221 |
Q |
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||| |
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| T |
24542034 |
tga |
24542036 |
T |
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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 3176710 - 3176802
Alignment:
| Q |
129 |
acatctttgcaattctcaaaattatttctttctctgtctttattttgtcgatgtgatgcctccattaaatacaattaattctgaagattatga |
221 |
Q |
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| T |
3176710 |
acatctttgcaattgtcaaaaaaaattcttgctctgtctgtattttgtccctgtgatgcctccattaaataaaattaattccgaagattatga |
3176802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3176585 - 3176631
Alignment:
| Q |
19 |
atcgatacc-tttttataaaaatataataaaatcgatgcttttttgt |
64 |
Q |
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| T |
3176585 |
atcgataccgtttttataaaaataaaataaaatcgatgtttttttgt |
3176631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 41536707 - 41536654
Alignment:
| Q |
114 |
tgcaaattctgaaggacatctttgcaattctcaaaattatttctttctctgtct |
167 |
Q |
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| T |
41536707 |
tgcaaattctgaaggacatctttgcaattgtcaaaattatttcttgttctgtct |
41536654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 20963297 - 20963249
Alignment:
| Q |
115 |
gcaaattctgaaggacatctttgcaattctcaaaattatttctttctct |
163 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
20963297 |
gcaaattctgaaggatatctttgcaattgtcaaaattatttcttgctct |
20963249 |
T |
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