View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_high_5 (Length: 457)
Name: NF19937_high_5
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 23334774 - 23335211
Alignment:
| Q |
1 |
ttggtttaagtattcaacaccataccctaatcaaacatatatggttcacaagaatatacactgaatcaatgatatgaacaaacctaatccttttacatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
23334774 |
ttggtttaagtattcaacaccataccctaatcaaacatatatggttcacaagaatataagctgaatcaatgttatgaacaaacctaatccttttacatat |
23334873 |
T |
|
| Q |
101 |
tgaattggttctacttgattcggatatcatgttaacccagatcgacaaccaccctcttcagttaccctcttctaaagttgaagaatgtttgctaatgtga |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23334874 |
tgaattgattctacttgattcggatatcatgttaacccagatcgacaatcaccctctttagttaccctcttctaaagttgaagaatgtttgctaatgtga |
23334973 |
T |
|
| Q |
201 |
ggagtgtttcttgtttcggttatgacgtcattctcatccaaatattgttgatacacataggatatgaagccccaaacagctagtaccatagaaatggcct |
300 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23334974 |
ggagtgtttctcgtttcggttatgacgtcgttctcatccaaatattgttgatacacataggatatgaagccccaaacagctagtaccatagaaatggcct |
23335073 |
T |
|
| Q |
301 |
taatcccatgcattttgtcttgaaagaaaaccacagctagtataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctc |
400 |
Q |
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| T |
23335074 |
taatcccatgcattttgtcttgaaagaaaaccacagctagtataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctc |
23335173 |
T |
|
| Q |
401 |
aaaaattagtccaacgcaaccaatactaaagacttgcc |
438 |
Q |
| |
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| T |
23335174 |
aaaaattagtccaacgcaaccaatactaaagacttgcc |
23335211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 232 - 438
Target Start/End: Complemental strand, 30825815 - 30825609
Alignment:
| Q |
232 |
tctcatccaaatattgttgatacacataggatatgaagccccaaacagctagtaccatagaaatggccttaatcccatgcattttgtcttgaaagaaaac |
331 |
Q |
| |
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||||||| |||||||||||||||| ||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
30825815 |
tctcatcaaaatattgttgatacatataagatataaatccccaagcagctagtaccatagaaatggccttaatcccatgcatttggtcttgaaagaatac |
30825716 |
T |
|
| Q |
332 |
cacagctagtataggaacaataggcatacctaaaacacttatagcattagagaatagtgaagaaacctcaaaaattagtccaacgcaaccaatactaaag |
431 |
Q |
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| || ||| |||| |||| ||| ||||||||| || ||||||||||||||| ||||| |||||||||||||||| ||||||||| | ||||||| | ||| |
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| T |
30825715 |
cgcacctaatatatgaactataagcatacctagaaaacttatagcattagaaaatagggaagaaacctcaaaaagtagtccaacaccaccaatattgaag |
30825616 |
T |
|
| Q |
432 |
acttgcc |
438 |
Q |
| |
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| ||||| |
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|
| T |
30825615 |
atttgcc |
30825609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 30825857 - 30825815
Alignment:
| Q |
169 |
cttctaaagttgaagaatgtttgctaatgtgaggagtgtttct |
211 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
30825857 |
cttctaaagttgaagaatctttgcctatgtgaggagtgtttct |
30825815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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