View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_high_7 (Length: 365)
Name: NF19937_high_7
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 88 - 348
Target Start/End: Original strand, 3006409 - 3006670
Alignment:
| Q |
88 |
ccttaatctataggattcttagcaatagcatacttgttatatatcaataatcaataattttacttgatgcttcagttttatcgtcaaatcttccatcaca |
187 |
Q |
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| T |
3006409 |
ccttaatctatgggattcttagcaatagcatacttgttatatatcaataatcaataattttacttgatgcttcagttttatcgtcaaatcttccatcaca |
3006508 |
T |
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| Q |
188 |
ttttgtagccagtagttagcttgacatgcacctgaagatcctactacatattattcttcataacttgat-aaagaaaccattaattgcttcttatatggc |
286 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3006509 |
ttttgtagcccgtagttagcttgacatgcaactgaagatcctactccatattattcttcataacttgataaaagaaaccattaattgcttcttatatggc |
3006608 |
T |
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| Q |
287 |
catgagatacgatctccttgtaccttaaacacataactaattgtgctcctcctatcaatttt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3006609 |
catgagatacgatctccttgtaccttaaacacataactaattgtgctcctcctatcaatttt |
3006670 |
T |
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