View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_low_10 (Length: 241)
Name: NF19937_low_10
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 23334546 - 23334786
Alignment:
| Q |
1 |
ctacaattaaagaaagcccaaagcataaataacaatctatatattgtgctaaactgtacttctaaacggtttctttttcaccacccaaaaacaaaaacta |
100 |
Q |
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| T |
23334546 |
ctacaattaaagaaagcccaaagcataaataacaatctatatattgtgctaaactgtacttctaaacggtttctttttcaccacccaaaaacaaaaacta |
23334645 |
T |
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| Q |
101 |
ttttcgaaatacaacaatagacatcataagactgtatttgtttcctaaaaaatatcacattcataaaactttaaaatacatttttcatcaagatgttata |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
23334646 |
ttttcgaaatacaaaaatagacatcataagactgtatttgtttcctaaaaaatatcacattcataaaactttaaaatacaattttcatcaagatgtaata |
23334745 |
T |
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| Q |
201 |
aatttaaaatcaccaacaatattgaaagttggtttaagtat |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
23334746 |
aatttaaaatcaccaacaatattgaaagttggtttaagtat |
23334786 |
T |
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