View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_low_12 (Length: 228)
Name: NF19937_low_12
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 1521896 - 1521670
Alignment:
| Q |
1 |
caaggaagtgacatatgctttttccaaagccatttcaaaatctttctgaagatttccctcttcacgacacaaacaaccttttctctttggaagcaaatgg |
100 |
Q |
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| T |
1521896 |
caaggaagtgacatatgctttttccaaagccatttcaaaatctttctgaagatttccctcttcacgacacaaacaaccttttctctttggaagcaaatgg |
1521797 |
T |
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| Q |
101 |
ttaaaacccaactggacacgaggcatgaattgaagctacccacttgtcaaccaaaggcgcggccaaatgacacacacacgctgccagaggtcaagctgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1521796 |
ttaaaacccaactggacacgaggcatgaattgaagctacccacttgtcaaccaaaggcgcggccaaatgacacacacacgctgccagaggtcaagctgtg |
1521697 |
T |
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| Q |
201 |
gttgagtgtgcactcctttcttatatt |
227 |
Q |
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| T |
1521696 |
gttgagtgtgcactcctttcttatatt |
1521670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 227
Target Start/End: Original strand, 22081049 - 22081200
Alignment:
| Q |
78 |
cttttctctttggaagcaaatggttaaaacccaactggacacgaggcatgaattgaagctacccacttgtcaaccaaaggcgcggccaaatg--acacac |
175 |
Q |
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||||||||||||||||||| | | |||||||||||| |||| | |||| | ||||||||||||||||||| ||||||| | |||||||| |||||| |
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| T |
22081049 |
cttttctctttggaagcaagttttgaaaacccaactgcacacatgtcatgtaaagaagctacccacttgtcaagcaaaggcactgccaaatgtcacacac |
22081148 |
T |
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| Q |
176 |
acacgctgccagaggtcaagctgtggttgagtgtgcactcctttcttatatt |
227 |
Q |
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| T |
22081149 |
acacgctgcaagaagtcaagctgtgcttgagtgtgcactcctttcttatatt |
22081200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22080963 - 22081010
Alignment:
| Q |
1 |
caaggaagtgacatatgctttttccaaagccatttcaaaatctttctg |
48 |
Q |
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|||||||||||||||||||||||| ||| || ||| |||||||||||| |
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| T |
22080963 |
caaggaagtgacatatgctttttcaaaaaccttttgaaaatctttctg |
22081010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 32172637 - 32172728
Alignment:
| Q |
138 |
acccacttgtcaaccaaaggcgcggccaaatgacacaca--cacgctgccagaggtcaagctgtggttgagtgtgcactcctttcttatatt |
227 |
Q |
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||||||||||||| ||||| ||| |||||||| |||||| |||||||||||| |||||||| |||||| |||||||||||||||||||| |
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| T |
32172637 |
acccacttgtcaagcaaagccgctgccaaatggcacacatacacgctgccagatgtcaagctcctgttgagcgtgcactcctttcttatatt |
32172728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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