View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19937_low_3 (Length: 551)

Name: NF19937_low_3
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19937_low_3
NF19937_low_3
[»] chr4 (3 HSPs)
chr4 (14-542)||(2244218-2244734)
chr4 (346-413)||(10430721-10430788)
chr4 (347-413)||(54780297-54780363)
[»] chr7 (3 HSPs)
chr7 (341-470)||(35406185-35406311)
chr7 (341-470)||(47261904-47262030)
chr7 (484-527)||(23071699-23071742)
[»] chr5 (3 HSPs)
chr5 (341-470)||(9718127-9718253)
chr5 (341-470)||(15928200-15928326)
chr5 (346-413)||(23284729-23284796)
[»] chr8 (1 HSPs)
chr8 (367-442)||(34546425-34546500)
[»] chr1 (2 HSPs)
chr1 (341-468)||(1803400-1803524)
chr1 (346-408)||(21741032-21741094)
[»] chr6 (1 HSPs)
chr6 (346-405)||(19740350-19740409)
[»] chr2 (2 HSPs)
chr2 (347-470)||(38987991-38988111)
chr2 (361-413)||(40446095-40446147)
[»] chr3 (1 HSPs)
chr3 (346-406)||(54577634-54577694)


Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 14 - 542
Target Start/End: Original strand, 2244218 - 2244734
Alignment:
Q  14 agagagaggattcttttggcttaatcttttgattctaggtagcattatgttactaaattactaatttttattttcatttgagaattgctaggtttcattt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244218 agagagaggattcttttggcttaatcttttgattctaggtagcattatgttactaaattactaatttttattttcatttgagaattgctaggtttcattt 2244317  T
Q  114 actgactgcacaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctgcggagttgatttgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2244318 actgactgcacaatccttcacgctcaattcctagctgtggagaacgccgagttgcactgattcactcgacggtaaagggaaagctacggagttgatttgt 2244417  T
Q  214 tttttcaactcagtggtgagtgacaaatttcaggttctgaattcttttctcaatatgcctcctaagattcctcctaagattagaaaatatgaatccggat 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||            ||||||||| ||||||| |||||||||||||    
T  2244418 tttttcaactcagtagtgagtgacaaatttcaggttctgaattcttttctcaatatg------------cctcctaagtttagaaagtatgaatccggat 2244505  T
Q  314 atgagaaacgtaagnnnnnnnnnnnncttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 413  Q
    ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2244506 atgagaaacgtaagaaaaagaaaaaacttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 2244605  T
Q  414 aaatcagaatgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacatctgagaagagtaatatggagaatgaaagtgttgatttggaa 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2244606 aaatcagaatgtcggtaatgttaatgttgatgttgaaattcttgaaaatgtggttacaactgagaagagtaatatggagaatgaaagtgttgatttggaa 2244705  T
Q  514 aatagaggtgatgttaatggtgatgatgt 542  Q
    |||||||||||||||||||||||||||||    
T  2244706 aatagaggtgatgttaatggtgatgatgt 2244734  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 10430788 - 10430721
Alignment:
Q  346 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 413  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  10430788 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattcctattga 10430721  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 54780297 - 54780363
Alignment:
Q  347 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 413  Q
    |||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||||| ||||    
T  54780297 agttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaattccttttga 54780363  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 470
Target Start/End: Complemental strand, 35406311 - 35406185
Alignment:
Q  341 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 437  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  35406311 ttgaaaagttcattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 35406218  T
Q  438 tgttgatgttgaaattcttgaaaatgtggttac 470  Q
    ||||||||||| | |||||||||||||||||||    
T  35406217 tgttgatgttggagttcttgaaaatgtggttac 35406185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 470
Target Start/End: Complemental strand, 47262030 - 47261904
Alignment:
Q  341 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 437  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  47262030 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 47261937  T
Q  438 tgttgatgttgaaattcttgaaaatgtggttac 470  Q
    ||||||||||| | |||||||||||||||||||    
T  47261936 tgttgatgttggagttcttgaaaatgtggttac 47261904  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 23071742 - 23071699
Alignment:
Q  484 aatatggagaatgaaagtgttgatttggaaaatagaggtgatgt 527  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  23071742 aatatggagaatgaaagtgttgatcagaaaaatagaggtgatgt 23071699  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 470
Target Start/End: Original strand, 9718127 - 9718253
Alignment:
Q  341 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 437  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  9718127 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 9718220  T
Q  438 tgttgatgttgaaattcttgaaaatgtggttac 470  Q
    ||||||||||| | |||||||||||||||||||    
T  9718221 tgttgatgttggagttcttgaaaatgtggttac 9718253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 341 - 470
Target Start/End: Original strand, 15928200 - 15928326
Alignment:
Q  341 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 437  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||||| |||||||| | |||||      || |||    
T  15928200 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcctattgaaaatgaaaatgt------tgataa 15928293  T
Q  438 tgttgatgttgaaattcttgaaaatgtggttac 470  Q
    ||||||||||| | |||||||||||||||||||    
T  15928294 tgttgatgttggagttcttgaaaatgtggttac 15928326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 23284796 - 23284729
Alignment:
Q  346 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 413  Q
    ||||| ||| |||| |||| |||||||||||| |||||| || |||||||| ||||||||||| ||||    
T  23284796 gagttaattgaatcccaaacaggagctcttgaaaaatttattgtaaaagaaacacaaattcctattga 23284729  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 34546500 - 34546425
Alignment:
Q  367 ggagctcttgataaatttcttataaaagaaccacaaattcctgttgaaaatcagaatgtcggtaatgttaatgttg 442  Q
    |||||||||||||||||| |||||||| ||| |||||||||| | |||||||||||||| | |||||  |||||||    
T  34546500 ggagctcttgataaatttgttataaaaaaacaacaaattcctttcgaaaatcagaatgttgataatgacaatgttg 34546425  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 468
Target Start/End: Complemental strand, 1803524 - 1803400
Alignment:
Q  341 ttgaagagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaa 437  Q
    ||||| |||| ||||||||||||| |||||||||| |||| ||| | |||||| | ||   |||||||||| |||||||| | |||||      || |||    
T  1803524 ttgaaaagttaattcaatctcaaaaaggagctcttaataagtttttgataaaatatccgcaacaaattcctattgaaaatgaaaatgt------tgataa 1803431  T
Q  438 tgttgatgttgaaattcttgaaaatgtggtt 468  Q
    ||||||||||| | |||||||||||||||||    
T  1803430 tgttgatgttggagttcttgaaaatgtggtt 1803400  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 408
Target Start/End: Complemental strand, 21741094 - 21741032
Alignment:
Q  346 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattcct 408  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || ||||||||  ||||||||||    
T  21741094 gagttaattgaatcccaaacaggagctcttgataaatttattttaaaagaaatacaaattcct 21741032  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 19740409 - 19740350
Alignment:
Q  346 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaatt 405  Q
    ||||| ||| |||| |||| ||||||||||||||||||| || |||||||| ||||||||    
T  19740409 gagttaattgaatcccaaacaggagctcttgataaatttattgtaaaagaaacacaaatt 19740350  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 470
Target Start/End: Original strand, 38987991 - 38988111
Alignment:
Q  347 agtttattcaatctcaaagaggagctcttgataaatttcttataaaagaacc---acaaattcctgttgaaaatcagaatgtcggtaatgttaatgttga 443  Q
    |||| ||||||||||||| |||||||||| |||| ||| | |||||||||||   |||||||| | | |||||| | |||||      || |||||||||    
T  38987991 agttaattcaatctcaaaaaggagctcttaataagtttttgataaaagaaccgcaacaaattcttatcgaaaatgaaaatgt------tgataatgttga 38988084  T
Q  444 tgttgaaattcttgaaaatgtggttac 470  Q
    ||||| | |||||||||||| ||||||    
T  38988085 tgttggagttcttgaaaatgcggttac 38988111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 40446095 - 40446147
Alignment:
Q  361 caaagaggagctcttgataaatttcttataaaagaaccacaaattcctgttga 413  Q
    |||| ||||||||||||||| ||| || |||||||| ||||||||||| ||||    
T  40446095 caaacaggagctcttgataattttattgtaaaagaaacacaaattcctattga 40446147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 54577694 - 54577634
Alignment:
Q  346 gagtttattcaatctcaaagaggagctcttgataaatttcttataaaagaaccacaaattc 406  Q
    ||||| ||| |||| |||| | ||||||||||||||||| || |||||||| |||||||||    
T  54577694 gagttaattgaatcccaaacatgagctcttgataaatttattgtaaaagaaacacaaattc 54577634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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