View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_low_4 (Length: 466)
Name: NF19937_low_4
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 48729274 - 48728826
Alignment:
| Q |
1 |
ttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacgatcaaaaatcacatttaacgagagaatagcaattt |
100 |
Q |
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| T |
48729274 |
ttgatcaaagcaggagctttgcatggtttttcacttgctcctactccgcttcacgaagagctacaatcaaaaatcacatttaacgagagaatagcaattt |
48729175 |
T |
|
| Q |
101 |
gtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatgaagcaacacttaa |
200 |
Q |
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| T |
48729174 |
gtgttactcgtttaagaaggagaatttcaagtgacacaagaaacgctttgttagtagttgctattcttttcgcaacaagtgcatatgaagcaacacttaa |
48729075 |
T |
|
| Q |
201 |
ccctccagctggtggagggaaattagtgatgatgaaaatgcatacatacttcttagggttttggtcgcttaatacattttcattttatgtttcaattttg |
300 |
Q |
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| T |
48729074 |
ccctccagctggtggggggaaattagtgatgatgaaaatgcatacatacttcttagggttttggtcgcttaatacattttcattttatgtttcaattttg |
48728975 |
T |
|
| Q |
301 |
atgatgtgtttattaatgccaagaggacgtataagtgttatagtgacatgtccacttgctctattctgtggctgttatatgttttccatgctagttatag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48728974 |
atgatgtgtttattaatgccaagaggacgtataagtgttatagtgacatgtccacttgctctattctgtggctgttatatgttttccatgctggttatag |
48728875 |
T |
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| Q |
401 |
caccaagctatacatttggaattgtcactgtggctatcccgtgcatact |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48728874 |
caccaagctatacatttggaattgtcactgtggctatcccgtgcatact |
48728826 |
T |
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