View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19937_low_6 (Length: 454)

Name: NF19937_low_6
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19937_low_6
NF19937_low_6
[»] chr5 (17 HSPs)
chr5 (22-378)||(39839805-39840161)
chr5 (118-240)||(12831493-12831615)
chr5 (118-240)||(12863468-12863590)
chr5 (155-220)||(7465257-7465322)
chr5 (60-224)||(19314999-19315163)
chr5 (118-214)||(21041946-21042042)
chr5 (155-210)||(29994652-29994707)
chr5 (150-212)||(7961152-7961214)
chr5 (72-234)||(27482657-27482819)
chr5 (155-223)||(16610602-16610670)
chr5 (43-110)||(31124185-31124252)
chr5 (150-224)||(26778715-26778789)
chr5 (312-378)||(33165088-33165154)
chr5 (153-214)||(18967885-18967946)
chr5 (154-234)||(11305854-11305934)
chr5 (43-87)||(17971989-17972033)
chr5 (180-212)||(32017992-32018024)
[»] chr4 (27 HSPs)
chr4 (27-378)||(30972233-30972581)
chr4 (124-378)||(21204745-21204994)
chr4 (39-379)||(27269847-27270187)
chr4 (294-379)||(41995845-41995930)
chr4 (118-240)||(20510390-20510512)
chr4 (297-378)||(33435943-33436024)
chr4 (27-212)||(52577890-52578075)
chr4 (150-220)||(10552667-10552737)
chr4 (60-234)||(22653226-22653400)
chr4 (124-245)||(37772915-37773036)
chr4 (128-212)||(48336967-48337051)
chr4 (43-106)||(16584335-16584398)
chr4 (155-220)||(30739519-30739584)
chr4 (155-214)||(11131193-11131252)
chr4 (153-224)||(29969876-29969947)
chr4 (301-364)||(48337126-48337189)
chr4 (155-204)||(18921946-18921995)
chr4 (342-379)||(34787885-34787922)
chr4 (150-214)||(25130447-25130511)
chr4 (45-105)||(25197110-25197170)
chr4 (178-214)||(54870824-54870860)
chr4 (150-229)||(19846557-19846636)
chr4 (150-229)||(29521680-29521759)
chr4 (59-88)||(13137018-13137047)
chr4 (327-375)||(13137299-13137346)
chr4 (327-379)||(42527183-42527234)
chr4 (153-229)||(43001741-43001817)
[»] chr2 (25 HSPs)
chr2 (30-379)||(35590132-35590475)
chr2 (27-94)||(39117324-39117391)
chr2 (43-105)||(21936723-21936785)
chr2 (321-379)||(41300517-41300575)
chr2 (150-213)||(841555-841618)
chr2 (27-94)||(18766576-18766643)
chr2 (27-234)||(30505621-30505828)
chr2 (120-234)||(37738071-37738186)
chr2 (150-220)||(24739846-24739916)
chr2 (155-220)||(1997697-1997762)
chr2 (64-209)||(37120900-37121045)
chr2 (118-234)||(36176628-36176743)
chr2 (43-98)||(37268135-37268190)
chr2 (150-229)||(45131117-45131196)
chr2 (27-229)||(9840672-9840874)
chr2 (178-220)||(40426926-40426968)
chr2 (118-223)||(27009195-27009300)
chr2 (57-214)||(31640176-31640332)
chr2 (205-325)||(41301920-41302038)
chr2 (43-99)||(9583543-9583599)
chr2 (327-375)||(45130944-45130992)
chr2 (155-230)||(20948142-20948217)
chr2 (327-379)||(20948311-20948364)
chr2 (342-378)||(38409223-38409259)
chr2 (153-213)||(44735982-44736042)
[»] chr6 (24 HSPs)
chr6 (60-378)||(14215864-14216180)
chr6 (32-245)||(9907069-9907282)
chr6 (120-245)||(22469421-22469546)
chr6 (171-379)||(10944163-10944367)
chr6 (27-94)||(12688093-12688160)
chr6 (150-220)||(32533064-32533134)
chr6 (155-214)||(11298598-11298657)
chr6 (155-221)||(18672069-18672134)
chr6 (25-214)||(11324371-11324560)
chr6 (167-210)||(18015755-18015798)
chr6 (28-94)||(27105180-27105244)
chr6 (28-94)||(27146989-27147053)
chr6 (299-379)||(17779321-17779402)
chr6 (43-88)||(34520512-34520557)
chr6 (150-214)||(17292772-17292836)
chr6 (178-214)||(29321330-29321366)
chr6 (45-105)||(33548676-33548736)
chr6 (155-234)||(7824123-7824202)
chr6 (154-245)||(12688220-12688311)
chr6 (59-89)||(24639112-24639142)
chr6 (155-224)||(2682796-2682865)
chr6 (314-379)||(14001931-14001995)
chr6 (155-220)||(15117251-15117316)
chr6 (327-379)||(9907359-9907410)
[»] chr7 (24 HSPs)
chr7 (27-256)||(40347888-40348114)
chr7 (79-229)||(12092634-12092784)
chr7 (27-233)||(17116390-17116596)
chr7 (123-211)||(27076574-27076662)
chr7 (123-211)||(27201639-27201727)
chr7 (33-209)||(29374715-29374891)
chr7 (155-234)||(34237188-34237267)
chr7 (150-220)||(40616734-40616804)
chr7 (118-240)||(41529387-41529509)
chr7 (150-211)||(27854911-27854972)
chr7 (59-99)||(16560029-16560069)
chr7 (59-99)||(16605593-16605633)
chr7 (153-229)||(26569739-26569815)
chr7 (339-379)||(37917904-37917944)
chr7 (150-210)||(38342993-38343053)
chr7 (43-87)||(41216339-41216383)
chr7 (43-110)||(37237909-37237976)
chr7 (155-226)||(38153939-38154010)
chr7 (327-378)||(43026157-43026208)
chr7 (60-223)||(47543365-47543528)
chr7 (195-229)||(7694374-7694408)
chr7 (338-372)||(29374555-29374589)
chr7 (43-100)||(14315512-14315569)
chr7 (189-234)||(42017855-42017900)
[»] chr3 (20 HSPs)
chr3 (120-244)||(25845647-25845771)
chr3 (121-240)||(33692880-33692999)
chr3 (297-365)||(16124929-16124998)
chr3 (150-211)||(19979287-19979348)
chr3 (124-245)||(25408767-25408888)
chr3 (155-214)||(29542393-29542452)
chr3 (155-214)||(41878726-41878785)
chr3 (118-214)||(6925948-6926044)
chr3 (43-99)||(51346347-51346403)
chr3 (118-214)||(53876887-53876983)
chr3 (154-220)||(42806289-42806355)
chr3 (43-111)||(44781767-44781835)
chr3 (155-211)||(47161022-47161078)
chr3 (155-214)||(22534037-22534096)
chr3 (43-110)||(35503849-35503916)
chr3 (155-210)||(37537238-37537293)
chr3 (156-214)||(6894228-6894286)
chr3 (153-227)||(36803190-36803264)
chr3 (318-379)||(31050869-31050930)
chr3 (189-217)||(42674100-42674128)
[»] chr1 (24 HSPs)
chr1 (28-220)||(4889357-4889549)
chr1 (33-245)||(44675007-44675219)
chr1 (21-228)||(34703474-34703681)
chr1 (155-214)||(12688212-12688271)
chr1 (27-229)||(22583181-22583383)
chr1 (155-229)||(26260785-26260859)
chr1 (155-214)||(28442151-28442210)
chr1 (59-229)||(9484783-9484953)
chr1 (150-214)||(5411768-5411832)
chr1 (118-214)||(48973648-48973744)
chr1 (64-245)||(52626451-52626630)
chr1 (328-375)||(30428457-30428504)
chr1 (59-110)||(51800488-51800539)
chr1 (35-229)||(25392313-25392507)
chr1 (180-234)||(36098606-36098660)
chr1 (300-378)||(44653858-44653935)
chr1 (62-223)||(40708441-40708601)
chr1 (45-105)||(33136223-33136283)
chr1 (327-378)||(4889650-4889701)
chr1 (43-106)||(48610916-48610979)
chr1 (178-220)||(28400552-28400594)
chr1 (118-204)||(31069642-31069728)
chr1 (178-211)||(45718390-45718423)
chr1 (60-96)||(6723835-6723871)
[»] chr8 (18 HSPs)
chr8 (145-226)||(21523884-21523965)
chr8 (297-376)||(21524003-21524082)
chr8 (33-206)||(39435468-39435640)
chr8 (120-213)||(8462520-8462613)
chr8 (155-226)||(37929141-37929212)
chr8 (30-204)||(9060672-9060846)
chr8 (43-106)||(459200-459263)
chr8 (150-214)||(7179036-7179100)
chr8 (150-232)||(10183457-10183539)
chr8 (155-220)||(38233236-38233301)
chr8 (28-87)||(16840208-16840267)
chr8 (155-226)||(31686422-31686493)
chr8 (179-214)||(41255043-41255078)
chr8 (178-220)||(38685817-38685859)
chr8 (180-240)||(5048545-5048605)
chr8 (327-379)||(43776437-43776489)
chr8 (178-220)||(33191203-33191245)
chr8 (155-235)||(5752015-5752095)
[»] scaffold0047 (1 HSPs)
scaffold0047 (45-245)||(64262-64462)
[»] scaffold0204 (2 HSPs)
scaffold0204 (128-212)||(24489-24573)
scaffold0204 (301-364)||(24648-24711)
[»] scaffold0225 (1 HSPs)
scaffold0225 (156-214)||(6540-6598)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 39839805 - 39840161
Alignment:
Q  22 gtcgctcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctaca 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  39839805 gtcgatcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaaaaaataataggttgttcaatgacaaagagtgccctatcctaca 39839904  T
Q  122 ggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcacc 221  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39839905 ggtggttgataaaattaagtcgacgtcgttcatgtggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcacc 39840004  T
Q  222 atgttgggtatagattaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataaatgcttctgtgactctggtgtctttctctggc 321  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39840005 atgttgtgtataggttaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataattgcttctgtgactctggtgtctttctctggc 39840104  T
Q  322 atacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39840105 atacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 39840161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 12831615 - 12831493
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||| ||||||||||| || || ||||||||||||| ||| |||    | |||||||| || | ||||||||||||||||||||| ||    
T  12831615 tacaggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgtt 12831516  T
Q  218 caccatgttgggtatagattaat 240  Q
    ||| |||||||| |||| |||||    
T  12831515 cactatgttgggcataggttaat 12831493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 12863590 - 12863468
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||| |||||||| || || || ||||||||||||| ||| |||    | |||||||| || | ||||||||||||||||||||| ||    
T  12863590 tacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgtt 12863491  T
Q  218 caccatgttgggtatagattaat 240  Q
    ||| |||||||| |||| |||||    
T  12863490 cactatgttgggcataggttaat 12863468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 7465257 - 7465322
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||||  |||||| |||||    
T  7465257 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 7465322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 19315163 - 19314999
Alignment:
Q  60 tgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggt 159  Q
    |||||||| || |||||||||||||||||||| ||||| | |||||| ||  |  |  | |||||||||||||| ||||||||  |  | || |||||||    
T  19315163 tgggaaatttggaaagaaagaaataacaggttattcaaaggcaaagaatggtcggtaatgcaggtggttgataagattaagtcactcacatttatgtggt 19315064  T
Q  160 tgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatg 224  Q
    |||||||||| ||| | |   ||||||  || |||||||||||||||||||| || || ||||||    
T  19315063 tgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgtttaccatg 19314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 21041946 - 21042042
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||| || |||||||||| | || | |||| ||||||  ||| |||||||  | ||||||||||||| |||||||| ||||||||||||||    
T  21041946 tacaggtggtggacaaaattaagttgttgactttcaagtggttataggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 21042042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 29994652 - 29994707
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggctta 210  Q
    ||||||||||| ||||||||| | ||||||||| || |||||||||||||||||||    
T  29994652 gtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggctta 29994707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 7961214 - 7961152
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagt 212  Q
    |||| ||||||||||||||||| | |  ||||||  |||||||||||||||||||||||||||    
T  7961214 ttcaagtggttgaaggcgaagtatgctactcttcattttaactatcatggttggtggcttagt 7961152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 234
Target Start/End: Complemental strand, 27482819 - 27482657
Alignment:
Q  72 aaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagt 171  Q
    ||||||||||||||||||||||| ||||| ||||| ||| |  |  | |||||||||||||| ||||||||  |  | ||   ||||||||||| ||| |    
T  27482819 aaagaaagaaataacaggttgtttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaat 27482720  T
Q  172 ttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
          | |||||||| || |||||||| |||||||||||||| |||||||||||||| ||||    
T  27482719 acgttacacttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcatag 27482657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 16610602 - 16610670
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
    |||||||||| ||||||||   ||||||||||| || |||||||| |||||||||||||| || |||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccat 16610670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 31124185 - 31124252
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgc 110  Q
    |||||| |||||||  ||||||||| || |||||||||||||||||| | |||||||  |||||||||    
T  31124185 tttggtttgctactgtgtgggaaatctggaaagaaagaaataacaggattttcaatgctaaagagtgc 31124252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 26778789 - 26778715
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatg 224  Q
    |||||||||||||||| ||| |||   |||||| |||| || ||||||||||||||| ||||||| || ||||||    
T  26778789 ttcatgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccatg 26778715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 378
Target Start/End: Complemental strand, 33165154 - 33165088
Alignment:
Q  312 tttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    |||| ||| ||||| ||||||||||||| ||||||||||||| ||||||| ||  |||||| |||||    
T  33165154 tttccctgacataccttgtgctagggagaaccttttgatgtgataatatattttattttagactctt 33165088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 18967885 - 18967946
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||||||| ||| | |||||||| |||||  ||||||| || |||||||||||    
T  18967885 atgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtcc 18967946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 11305854 - 11305934
Alignment:
Q  154 tgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    ||||||||||||||||  ||||   ||| ||||| ||||| |||| ||||||||||||||| ||||  |||||||| ||||    
T  11305854 tgtggttgaaggcgaaaattcctaatctccccttcaactaccatgtttggtggcttagtccattcaatatgttgggcatag 11305934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 17972033 - 17971989
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataaca 87  Q
    |||||| |||||||  |||||||||||| ||||||||||||||||    
T  17972033 tttggtttgctactgtgtgggaaatatggaaagaaagaaataaca 17971989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 32018024 - 32017992
Alignment:
Q  180 cttccctttaactatcatggttggtggcttagt 212  Q
    ||||||||||| |||||||||||||||||||||    
T  32018024 cttccctttaattatcatggttggtggcttagt 32017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 27 - 378
Target Start/End: Complemental strand, 30972581 - 30972233
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    |||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||| | | || |||| |||||||||| | ||  | |||||||    
T  30972581 tcaattttacaggttctttggtatgcaactacgtggaaaatttggaaagaaagaaataacatgctctttaatggcaaagagtgctcaattatgcaggtgg 30972482  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||||||||||||| || | ||||||||| |||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||  ||||| || ||    
T  30972481 ttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtcatttcactatttt 30972382  T
Q  227 gggtatagattaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataaatgcttctgtgactctggtgtc-tttctctggcatac 325  Q
     || ||||  |||| |||| | | |||||| ||| |||| |||| |||||||||||||||||  || ||   ||||| ||||||| ||||  |||||||     
T  30972381 tggcataggctaatagttatttgctttctttagtcactg-ttttggttttcccttgtaaatatttgttt---tgactttggtgtcttttccttggcatat 30972286  T
Q  326 attgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
     || || ||||||||||||||||||||||||||||| ||| || |||||||||    
T  30972285 cttatgttagggaggaccttttgatgtggtaatatatttcattgtagcctctt 30972233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 378
Target Start/End: Complemental strand, 21204994 - 21204745
Alignment:
Q  124 tggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
    ||||||||||||||||||| ||  | |||||||||||||| ||||| ||| | || |||||||| || ||||||||||||||||||||| | ||||| ||    
T  21204994 tggttgataaaattaagtcaatcactttcatgtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagttcattcacaat 21204895  T
Q  224 gttgggtatagattaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataaatgcttctgtgactctggtgtctttctctggcat 323  Q
     ||||  ||||  |||| |||| | |||||||| ||||| || |||||||| |  | ||||||||    ||  ||||||||| |||| | |||||| |||    
T  21204894 tttggacataggctaatagttatttgttttctttagttaatgctttttgttgttac-tgtaaata----ctgttgtgactctagtgtttctctctgacat 21204800  T
Q  324 acattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    || |||||||||||||||  |||||||||||||||||| ||| ||||||| ||||    
T  21204799 accttgtgctagggaggattttttgatgtggtaatatatttcattttagcatctt 21204745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 379
Target Start/End: Complemental strand, 27270187 - 27269847
Alignment:
Q  39 gttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaatta 138  Q
    |||||||||||||| || ||||| ||||| || |||||||||||||||| | | || || | ||   | || || ||  | || ||||||||||||||||    
T  27270187 gttctttggtatgcaacaacgtgagaaatctggaaagaaagaaataacatgctctttaaaggcactcaatgaccaattgttcacgtggttgataaaatta 27270088  T
Q  139 agtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagatta 238  Q
    |||| ||  | |||||||||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||| ||||| || ||||  |||   ||    
T  27270087 agtcaatcactttcatgtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcacaattttggacatatgcta 27269988  T
Q  239 attgttagtggttttcttaagttactgttttttgttttcccttgtaaa---taaatgcttctgtgactctggtgtctttctctggcatacattgtgctag 335  Q
    || |||| | |||||||| ||||| || |||||||| |    ||||||   ||||| ||  ||||||||| |||| | |||||||||||| || | ||||    
T  27269987 atagttatttgttttctttagttaatgctttttgttgt--aatgtaaatactaaatactgttgtgactctagtgtttctctctggcataccttatactag 27269890  T
Q  336 ggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||| || |||||||||||| ||||| |||  ||||||||||||    
T  27269889 ggagaactttttgatgtggtgatatatttc-atttagcctcttc 27269847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 41995930 - 41995845
Alignment:
Q  294 ttctgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||||||||||| ||||||||||||| |||| || ||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  41995930 ttctgtgactctgatgtctttctctggtataccttatgctagggaagatcttttgatgtggtaatataattcattttagcctcttc 41995845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 20510390 - 20510512
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||| |||||||| || || || ||||||||||||| ||| |||    | |||||||| || | ||||||||||||||||||||| ||    
T  20510390 tacaggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgtt 20510489  T
Q  218 caccatgttgggtatagattaat 240  Q
    ||||||| |||| |||| |||||    
T  20510490 caccatgctgggcataggttaat 20510512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 33435943 - 33436024
Alignment:
Q  297 tgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    ||||||| ||||||||||| ||||||||| || | ||||||| ||| |||||||||||||||||||||| ||||| ||||||    
T  33435943 tgtgactatggtgtctttccctggcataccttatactagggaagacattttgatgtggtaatataattcattttaacctctt 33436024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 52577890 - 52578075
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    |||||| |||||||  |||||| ||||||   ||||||||| || || ||||||||||||||| | |||||||| ||||  ||| |  | || ||||||     
T  52577890 tcaattctacaggtcatttggtttgctacggtgtgggaaatctggaaggaaagaaataacaggcttttcaatgataaagtttgctcggttcttcaggtga 52577989  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagt 212  Q
    | ||||| ||||||||  |  | || | ||||||||||| |||||||  |||||||||||| || |||||||||||||||||||||    
T  52577990 tagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagt 52578075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 10552667 - 10552737
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||| ||||||||||| ||||| | |  ||||||||||||||||||||||||||||||||||||| |||||    
T  10552667 ttcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtccgttcac 10552737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 22653226 - 22653400
Alignment:
Q  60 tgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggt 159  Q
    |||||||| ||||||||||||||||||||| | ||||| ||||||   ||| |  |  |||||||||||||||| ||||| ||| |  | || |||||||    
T  22653226 tgggaaatttgaaaagaaagaaataacaggctattcaaagacaaactatgctcggtaatacaggtggttgataagattaaatcgctcacatttatgtggt 22653325  T
Q  160 tgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    |||||||||| ||| | |   || |||| || ||||||||||||||||||||||  || |||||| || ||||||    
T  22653326 tgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgtttaccatgctgagtatag 22653400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 37772915 - 37773036
Alignment:
Q  124 tggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
    |||||||||| ||||||||| |  | ||| | ||||||||   ||| ||||| ||||||||||| || || |||||||||||||||||||| ||||||||    
T  37772915 tggttgataacattaagtcgctcactttcttatggttgaaaaagaaatttccttctcttcccttcaattaccatggttggtggcttagtcctttcaccat 37773014  T
Q  224 gttgggtatagattaattgtta 245  Q
     ||||| || | ||||||||||    
T  37773015 tttgggcattggttaattgtta 37773036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 48336967 - 48337051
Alignment:
Q  128 tgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagt 212  Q
    |||||||||||||||| |  | |||||||||||||||||||| ||||| ||||||||||| ||  ||||| |||||||| |||||    
T  48336967 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagt 48337051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 16584335 - 16584398
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaaga 106  Q
    |||||||||||||| ||||  |||||||||||||||||||||||| ||| |||||||| |||||    
T  16584335 tttggtatgctactgcgtgaaaaatatgaaaagaaagaaataacaagttattcaatgataaaga 16584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 30739584 - 30739519
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||||  |||||| |||||    
T  30739584 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcac 30739519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 11131252 - 11131193
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||    ||||||||||||| |||||||||||||||||||||||    
T  11131252 gtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcc 11131193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 29969876 - 29969947
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatg 224  Q
    ||||||||||||||||| ||| |  ||||||||||  ||| | ||||||||||||||||||| |||||||||    
T  29969876 atgtggttgaaggcgaaatttactactcttcccttctacttttatggttggtggcttagtccgttcaccatg 29969947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 48337126 - 48337189
Alignment:
Q  301 actctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataatt 364  Q
    |||||||||| ||||  |||||| | || |||||||||| ||||||||||||||||||||||||    
T  48337126 actctggtgtttttccttggcatgccttatgctagggagaaccttttgatgtggtaatataatt 48337189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 18921946 - 18921995
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggt 204  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||    
T  18921946 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggt 18921995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 379
Target Start/End: Complemental strand, 34787922 - 34787885
Alignment:
Q  342 ccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||||||||||||||||||||||| |||||||||||||    
T  34787922 ccttttgatgtggtaatataattccttttagcctcttc 34787885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 25130511 - 25130447
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||||||||| ||| ||| |  ||||| || | ||||||||||||||||||||||||||    
T  25130511 ttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtcc 25130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 25197110 - 25197170
Alignment:
Q  45 tggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaag 105  Q
    ||||||||||||| |||||||||||  ||||||||||||| |||||| ||| ||| |||||    
T  25197110 tggtatgctactatgtgggaaatatagaaagaaagaaatatcaggttattcgatggcaaag 25197170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 54870860 - 54870824
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||| |||||||||||||||||||||||    
T  54870860 ctcttccctttaattatcatggttggtggcttagtcc 54870824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 19846557 - 19846636
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||| || |||| ||||| | | ||||||||||| || |||||||| |||||| ||||||| || |||||||||||    
T  19846557 ttcatgtgtttaaaggtgaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttggg 19846636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 29521759 - 29521680
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||||||||||||||| | | | |||||||| || || ||||||| ||||||| ||| ||| ||||| ||||||||    
T  29521759 ttcatgtggttgaaggcgaaatgtgcttctcttcctttcaattatcatgattggtggtttaatccgttcacaatgttggg 29521680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Original strand, 13137018 - 13137047
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacag 88  Q
    ||||||||||||||||||||||||||||||    
T  13137018 gtgggaaatatgaaaagaaagaaataacag 13137047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 375
Target Start/End: Original strand, 13137299 - 13137346
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcct 375  Q
    |||||||||| || |||||||| |||||||||||||||| |||||||||    
T  13137299 ttgtgctaggaag-accttttgttgtggtaatataattcattttagcct 13137346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 42527234 - 42527183
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||||||||| ||| ||||||||||| |||||||||||| |||| ||||||||    
T  42527234 ttgtgctaggaagg-ccttttgatgtagtaatataattcatttttgcctcttc 42527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 43001741 - 43001817
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    ||||||||||||||||||||| |  ||||||  || || ||||||   |||||||||||||| |||| |||||||||    
T  43001741 atgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtccgttcagcatgttggg 43001817  T

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Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 379
Target Start/End: Original strand, 35590132 - 35590475
Alignment:
Q  30 attttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttg 129  Q
    |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||| |||||| ||| | ||  | ||||||||||    
T  35590132 attttacatgttctttggtatgcaactacgtgggaaatctggaaagaaagaaataacaggtttttcaatggcaaagaatgctcaattattcaggtggttg 35590231  T
Q  130 ataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||||||| | || | |||| |||| |||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||| | || |||||    
T  35590232 ataaaattaagttgctgactttcaggtggctgaaggcgaagtatccgtgtcttcccttcaactatcatggttggtggcttagccccttctctattttggg 35590331  T
Q  230 tatagattaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataaatgcttctgtgactctggtgtctttctctggcatacattg 329  Q
     ||||  |||| |||| ||| |||||    | ||| ||||||| |||||||||||||||  |||      ||||||||||| | |||||||||||| |||    
T  35590332 cataggctaatagttaatggctttctgttttcactattttttg-tttcccttgtaaatatttgc-----agactctggtgtttctctctggcataccttg 35590425  T
Q  330 tgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||| |||  | | ||||||||||||||||||||||| |||||||||||||    
T  35590426 tgcaaggttgaatcttttgatgtggtaatataattcattttagcctcttc 35590475  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 39117324 - 39117391
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgtt 94  Q
    ||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  39117324 tcaattttacaggttatttggtatgctactatgtgggaaatctggaaagaaagaaataacaggttgtt 39117391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 21936785 - 21936723
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaag 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||    
T  21936785 tttggtatgctactacgtgggaaatatggaaagaaagaaataacaggttattcagtgataaag 21936723  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 41300575 - 41300517
Alignment:
Q  321 catacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  41300575 cataccttgtgctagggaggatcttttgatgtggtaatataattcattttagcctcttc 41300517  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 841618 - 841555
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtc 213  Q
    |||| ||||||||||| ||||| | |  ||||||||||||||||||||||||||||||||||||    
T  841618 ttcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtc 841555  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 18766576 - 18766643
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgtt 94  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| |  ||||||||||| |||||||||||    
T  18766576 tcaattttacaggttatttggtatgctactatgtgagaaatctagaaagaaagaaacaacaggttgtt 18766643  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 30505621 - 30505828
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    ||||| ||||||||| |||||| |||||||   || ||||| || |||||||||||||||||| | ||||| |||||| | | | | ||  |||| ||||    
T  30505621 tcaatattacaggttatttggtttgctactgtttgagaaatttggaaagaaagaaataacaggctattcaaagacaaaaaatactcgataatacatgtgg 30505720  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||| |||||||   |  | || || | |||||||| ||| ||| | || |||||||| || ||||||||||||||| ||||||  || ||||||||    
T  30505721 ttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttaccatgtt 30505820  T
Q  227 gggtatag 234  Q
    ||| ||||    
T  30505821 gggcatag 30505828  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 37738186 - 37738071
Alignment:
Q  120 caggtggttgataaaattaagtcgatgtcgttcatgtggt-tgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttc 218  Q
    ||||||| |||||| ||||||||| |  | |||||||||  |||||||||| ||  |  ||||||||||||||| |||||| |||||||||||||| |||    
T  37738186 caggtggctgataagattaagtcgctcactttcatgtggcctgaaggcgaaattcactactcttccctttaactttcatggctggtggcttagtccgttc 37738087  T
Q  219 accatgttgggtatag 234  Q
    ||||| ||||| ||||    
T  37738086 accattttgggcatag 37738071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 24739846 - 24739916
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||| ||||||||||| ||||| | |  | ||||||||||||||||||||||||||||||||||| |||||    
T  24739846 ttcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggcttagtccgttcac 24739916  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 1997762 - 1997697
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||||  |||||| |||||    
T  1997762 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcac 1997697  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 37121045 - 37120900
Alignment:
Q  64 aaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaa 163  Q
    |||| ||||||||||||||||||| | | ||||| | ||| || ||| | ||  | || |||||||||||||| |||||| | || || |||||||||||    
T  37121045 aaatctgaaaagaaagaaataacatgatattcaaagtcaaggaatgctccattattcacgtggttgataaaataaagtcgctctcatttatgtggttgaa 37120946  T
Q  164 ggcgaagtttccatctcttccctttaactatcatggttggtggctt 209  Q
    ||| |||||| | ||||||||  | |||||| |||| |||||||||    
T  37120945 ggcaaagtttacctctcttcctctgaactattatgggtggtggctt 37120900  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 36176743 - 36176628
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||| ||||||||| |  | || |||||||| | || ||| ||| | ||||||| ||| || ||||||||||||||  ||||||| ||    
T  36176743 tacaggtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccatt 36176645  T
Q  218 caccatgttgggtatag 234  Q
     ||||||||||||||||    
T  36176644 taccatgttgggtatag 36176628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 37268135 - 37268190
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaat 98  Q
    |||||||||| ||||||||||||||||| |||| |||||||| |||||| ||||||    
T  37268135 tttggtatgccactacgtgggaaatatggaaagtaagaaatagcaggttattcaat 37268190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 45131196 - 45131117
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||||||||||| ||| | | | ||||||||||| || |||||||| |||||||||||||| || |||||| ||||    
T  45131196 ttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgctggg 45131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 9840672 - 9840874
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    ||||||||||||||| | |||| |||||| |  |||||||| || |||||||||||||||||| | ||||   |||||   ||| |  |  | || ||||    
T  9840672 tcaattttacaggttatatggtttgctaccatttgggaaatttggaaagaaagaaataacaggatattcacaaacaaatcatgctcggtaattcaagtgg 9840771  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||| ||||| ||| |  | || ||||| |||||||| || ||| |  ||||||| || || ||||||||||||||||||| ||| ||||||||| |    
T  9840772 ttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggcttaatccgttcaccatgat 9840871  T
Q  227 ggg 229  Q
    |||    
T  9840872 ggg 9840874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 40426968 - 40426926
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  40426968 ctcttccctttaactatcatggttggtggcttaatccgttcac 40426926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 27009195 - 27009300
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||| ||||||||||| ||||||||  |  | || | ||| ||||||||||| ||| | ||||||||||| || || |||||||||||||||||||| ||    
T  27009195 tacacgtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtt 27009294  T
Q  218 caccat 223  Q
     |||||    
T  27009295 taccat 27009300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 31640176 - 31640332
Alignment:
Q  57 acgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgt 156  Q
    ||||||||||| || || ||||||||||||||||  |||||||||||||  ||| |  | || || ||||| ||||| ||||||||  |  | || | ||    
T  31640176 acgtgggaaatttggaaggaaagaaataacaggtccttcaatgacaaagtttgctc-gttcttcaagtggtagataagattaagtcacttgcttttacgt 31640274  T
Q  157 ggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||| ||| | ||||||||| | || || ||||| ||||||||||||||    
T  31640275 ggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtcc 31640332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 325
Target Start/End: Complemental strand, 41302038 - 41301920
Alignment:
Q  205 ggcttagtcccttcaccatgttgggtatagattaattgttagtggttttcttaagttactgttttttgttttcccttgtaaataaatgcttctgtgactc 304  Q
    |||||||||||||||||||||||||||||| ||||  ||||   | ||||| |||||| ||  |||  | || | ||||||||||||  || ||||| ||    
T  41302038 ggcttagtcccttcaccatgttgggtataggttaacggttatctgctttctgaagttattgcgttt--tattacattgtaaataaatatttttgtgattc 41301941  T
Q  305 tggtgtctttctctggcatac 325  Q
    | |||||||||||||||||||    
T  41301940 tcgtgtctttctctggcatac 41301920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 9583599 - 9583543
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatg 99  Q
    |||||| |||||||  ||||||||||| ||||||||||||||||||| | |||||||    
T  9583599 tttggtttgctactgtgtgggaaatataaaaagaaagaaataacaggattttcaatg 9583543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 375
Target Start/End: Complemental strand, 45130992 - 45130944
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcct 375  Q
    ||||||| || ||||| |||||||||||||||||||||| |||||||||    
T  45130992 ttgtgctgggaaggactttttgatgtggtaatataattcattttagcct 45130944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 20948142 - 20948217
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggt 230  Q
    ||||||||||||||||| | | ||||||| | | || || ||||| |||||||||||||| || ||||||||||||    
T  20948142 gtggttgaaggcgaagtattcttctcttcgcctcaattaccatgggtggtggcttagtccgtttaccatgttgggt 20948217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 20948311 - 20948364
Alignment:
Q  327 ttgtgctagggaggac-cttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||||||||| ||||| ||||||| ||||||||||||||| ||||||| |||||    
T  20948311 ttgtgctaggaaggactcttttgaggtggtaatataattcattttagcttcttc 20948364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 38409223 - 38409259
Alignment:
Q  342 ccttttgatgtggtaatataattcgttttagcctctt 378  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  38409223 ccttttgttgtggtaatataattcattttagcctctt 38409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 44736042 - 44735982
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtc 213  Q
    |||||||||||||||||||||    |||||||||| || | |||||||| |||||||||||    
T  44736042 atgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 60 - 378
Target Start/End: Complemental strand, 14216180 - 14215864
Alignment:
Q  60 tgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggt 159  Q
    ||||||||||| |||||||| ||||| ||| | || |||| |||||| ||| | ||  | |||||| |||||||| |||||||| || ||||||||||||    
T  14216180 tgggaaatatggaaagaaaggaataatagggtatttaatggcaaagaatgctcaattgtgcaggtgattgataaagttaagtcgctgacgttcatgtggt 14216081  T
Q  160 tgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaattgttagtggttttcttaag 259  Q
    |||||  ||| ||||| ||||||| |||  |||||||| ||||||||||||  || || ||||||||||| ||||  |||| |||| ||| |||||| |     
T  14216080 tgaagaagaaatttccttctcttctcttcgactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttattggctttctttac 14215981  T
Q  260 ttactgttttttgttttcccttgtaaataaatgcttctgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaata 359  Q
    | |||||||||||| | || |||||||||  || || |||||||||||||||||||||||| |||| |||||||||| | ||||||||||||||||||||    
T  14215980 tcactgttttttgtat-ccattgtaaatatttgttt-tgtgactctggtgtctttctctggtataccttgtgctaggcatgaccttttgatgtggtaata 14215883  T
Q  360 taattcgttttagcctctt 378  Q
    |||||| ||||||||||||    
T  14215882 taattcattttagcctctt 14215864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 245
Target Start/End: Original strand, 9907069 - 9907282
Alignment:
Q  32 tttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgat 131  Q
    ||||||||||||||||| ||| ||| |||||||||| || |||||||||||||||||||| || |||| ||| ||   | |||| |  |||||||| |||    
T  9907069 tttacaggttctttggtttgcaacttcgtgggaaatttggaaagaaagaaataacaggttatttaatggcaaggatacctctattcctcaggtggtagat 9907168  T
Q  132 aaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggta 231  Q
    |||||||||||| |  | |||||||||||||||| ||| |  || ||| ||||||| || |||||||  |||||||||| ||| |||||||| || || |    
T  9907169 aaaattaagtcgctcgctttcatgtggttgaaggagaaatacccttctattcccttcaattatcatgcgtggtggcttaatccattcaccattttaggca 9907268  T
Q  232 tagattaattgtta 245  Q
    |||  |||||||||    
T  9907269 taggctaattgtta 9907282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 22469421 - 22469546
Alignment:
Q  120 caggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttca 219  Q
    |||||||| ||||||||||||||| |  | ||||||||||||||||  || |  || ||||||||||| || ||||||| ||||||||||||||| ||||    
T  22469421 caggtggtagataaaattaagtcgctcgctttcatgtggttgaaggataaatacccttctcttcccttcaattatcatgcttggtggcttagtccattca 22469520  T
Q  220 ccatgttgggtatagattaattgtta 245  Q
    |||| ||| | |||| ||||||||||    
T  22469521 ccattttgagcataggttaattgtta 22469546  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 379
Target Start/End: Original strand, 10944163 - 10944367
Alignment:
Q  171 tttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaattgttagtggttttcttaagttactgttttt 270  Q
    ||||| |||||||||||||| || ||||||| |||||||||||| | |||||| ||||  ||   ||||| ||| || ||||||||  |||  |||||||    
T  10944163 tttccttctcttccctttaattaccatggtttgtggcttagtccttacaccattttggacattagttaatagtttgttgttttcttttgttgttgttttt 10944262  T
Q  271 tgttttcccttgtaaataaatgcttctgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgtttt 370  Q
    |||||    |||||||||    ||  ||||||| ||||||  |||||| |||||| ||||||||||||||| ||||||  |||||||||||  || ||||    
T  10944263 tgtttatagttgtaaata----ctgttgtgactttggtgttcttctctagcataccttgtgctagggaggaacttttgcagtggtaatatatctcatttt 10944358  T
Q  371 agcctcttc 379  Q
    || ||||||    
T  10944359 agtctcttc 10944367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 12688093 - 12688160
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgtt 94  Q
    ||||||||||||||| ||||||||||| ||| ||||||||| || |||||| ||||||||||||||||    
T  12688093 tcaattttacaggttatttggtatgctgctatgtgggaaatctggaaagaacgaaataacaggttgtt 12688160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 32533134 - 32533064
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||| ||||||||||  ||||||| |  ||||||||||||||||||||||||||||||||||||| |||||    
T  32533134 ttcaagtggttgaagatgaagtttgctactcttccctttaactatcatggttggtggcttagtccgttcac 32533064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 11298657 - 11298598
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  11298657 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 11298598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 18672069 - 18672134
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcacc 221  Q
    ||||||||||| ||||| || | ||||||||||||||||||||||||||||||| ||||| ||||||    
T  18672069 gtggttgaaggtgaagtatcta-ctcttccctttaactatcatggttggtggctgagtccgttcacc 18672134  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 11324371 - 11324560
Alignment:
Q  25 gctcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggt 124  Q
    |||||||| | |||||  |||||| ||||||   |||| |||| || || ||||||||||||||| | |||||||||||||  ||| |  | || ||| |    
T  11324371 gctcaattgttcaggtcatttggtttgctacggtgtggaaaatttggaaggaaagaaataacaggctcttcaatgacaaagtttgctcggttcttcagat 11324470  T
Q  125 ggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||| || || ||||||| | |  | || | ||||||||||||||| ||| | ||||||||||| || |||||||| ||||||||||||||    
T  11324471 ggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtcc 11324560  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 18015798 - 18015755
Alignment:
Q  167 gaagtttccatctcttccctttaactatcatggttggtggctta 210  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  18015798 gaagtttacaactcttccctttaactatcatggttggtggctta 18015755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 27105180 - 27105244
Alignment:
Q  28 caattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgtt 94  Q
    ||||||| |||||| |||||||||||||||  |||||||| || |||||| ||||||||||||||||    
T  27105180 caattttgcaggttatttggtatgctacta--tgggaaatctggaaagaacgaaataacaggttgtt 27105244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 27146989 - 27147053
Alignment:
Q  28 caattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgtt 94  Q
    ||||||| |||||| |||||||||||||||  |||||||| || |||||| ||||||||||||||||    
T  27146989 caattttgcaggttatttggtatgctacta--tgggaaatctggaaagaacgaaataacaggttgtt 27147053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 17779402 - 17779321
Alignment:
Q  299 tgactctggtgtctttctctggcatacattgtgctagggagga-ccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||| ||||||  ||||||||||||| |||||||||||| || |||||||  |||||||||||  || |||||||||||||    
T  17779402 tgactttggtgttcttctctggcataccttgtgctagggatgacccttttgcagtggtaatatatctcattttagcctcttc 17779321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 34520557 - 34520512
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacag 88  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||    
T  34520557 tttggtttgctaccacgtgggaaatataaaaagaaagaaataacag 34520512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 17292836 - 17292772
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||||||| || || ||| | ||||||||||| || ||||||||||| |||||||||||    
T  17292836 ttcatgtggttgaacgccaaatttgcttctcttcccttcaattatcatggttgatggcttagtcc 17292772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 29321366 - 29321330
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29321366 ctcttccctttaactatgatggttggtggcttagtcc 29321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 33548736 - 33548676
Alignment:
Q  45 tggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaag 105  Q
    ||||||||||| | |||| ||||||||||||||||||| |||||| | ||||||| |||||    
T  33548736 tggtatgctacgatgtggaaaatatgaaaagaaagaaacaacaggatattcaatggcaaag 33548676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 7824202 - 7824123
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    ||||||||||||||||| | | ||||||||| | || || ||||| ||||||||||| || |||||||| ||||| ||||    
T  7824202 gtggttgaaggcgaagtattcctctcttcccctcaattaccatgggtggtggcttagcccgttcaccattttgggcatag 7824123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 12688220 - 12688311
Alignment:
Q  154 tgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaattgtta 245  Q
    |||||||||||| ||| ||| |  ||||||||||||| |  ||||| |||||||||||||| ||| | |||||||| ||||  |||||||||    
T  12688220 tgtggttgaaggagaaatttactactcttccctttaatttacatggctggtggcttagtccgttcgcaatgttgggcataggctaattgtta 12688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 89
Target Start/End: Original strand, 24639112 - 24639142
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacagg 89  Q
    |||||||||||||||||||||||||||||||    
T  24639112 gtgggaaatatgaaaagaaagaaataacagg 24639142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 2682796 - 2682865
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatg 224  Q
    ||||||||||| ||| |||||  || ||| ||| || | ||||||||||||||||||||| |||||||||    
T  2682796 gtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttcaccatg 2682865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 14001931 - 14001995
Alignment:
Q  314 tctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||||| |||  |||||||| ||||| |||||||||||||||||||| ||| |||||||| ||||    
T  14001931 tctctggtatatcttgtgctaaggagg-ccttttgatgtggtaatatatttcattttagccgcttc 14001995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 15117316 - 15117251
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||| ||||| | |  ||||||||||||| |||||||||||||||  |||||| |||||    
T  15117316 gtggttgaaggtgaagtatgctactcttccctttaattatcatggttggtggagtagtcctttcac 15117251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 9907359 - 9907410
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||||||||| |||||||||| |||| ||||||| ||| |||||||||||||    
T  9907359 ttgtgctaggg-ggaccttttgttgtgataatatatttcattttagcctcttc 9907410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 40347888 - 40348114
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    |||||||||||||||||| ||||||| ||   |||||||||||| |||||||||||||||||  |||||||||  ||||||||||| ||  | ||| |||    
T  40347888 tcaattttacaggttcttaggtatgccac---gtgggaaatatggaaagaaagaaataacagactgttcaatggtaaagagtgcccaattatgcagatgg 40347984  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    | ||||||||||||||| || |||||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||  || ||||| |||||    
T  40347985 tagataaaattaagtcgctgacgttcatgtggttgaaggcgaagtttccatttcttcctttcaactatcatggttgatggcttaaccctttcactatgtt 40348084  T
Q  227 gggtatagattaattgttagtggttttctt 256  Q
    ||  ||||| |||| |||| ||| ||||||    
T  40348085 ggacatagactaatagttattggctttctt 40348114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 12092634 - 12092784
Alignment:
Q  79 gaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatc 178  Q
    ||||||||||  | |||||||  ||||| ||| | ||| |||||||||| ||||| ||||||||  | || |||||||||||||||||||| ||| | ||    
T  12092634 gaaataacagaatattcaatgctaaagaatgctcgatcttacaggtggtagataagattaagtcactttccttcatgtggttgaaggcgaaattttcctc 12092733  T
Q  179 tcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    ||||||||| ||||||||||| | |||||||||||| || || ||||||||    
T  12092734 tcttcccttaaactatcatggatagtggcttagtccatttactatgttggg 12092784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 17116596 - 17116390
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    ||||||||||| ||| |||||| |||||  |  || ||||| || |||||||||||||||||||| ||||| | |||||| ||| |  |  |||| ||||    
T  17116596 tcaattttacaagttatttggtttgctatcatttgagaaatttggaaagaaagaaataacaggttattcaaaggcaaagattgctcggtaatacaagtgg 17116497  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||| ||||||||  |  | || ||||||||||||||||| | | | ||||||||||| |  ||||||||||||||||||||||  || ||||| ||    
T  17116496 ttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttaccatatt 17116397  T
Q  227 gggtata 233  Q
    |||||||    
T  17116396 gggtata 17116390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 27076574 - 27076662
Alignment:
Q  123 gtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttag 211  Q
    ||||||||||||||| ||| | || | |||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  27076574 gtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtggcttag 27076662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 27201727 - 27201639
Alignment:
Q  123 gtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttag 211  Q
    ||||||||||||||| ||| | || | |||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  27201727 gtggttgataaaattgagtagctgactttcaggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtggcttag 27201639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 29374891 - 29374715
Alignment:
Q  33 ttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgata 132  Q
    |||||||||||||||| ||| ||  ||||||| || || ||||||||||| || ||| | |||| ||  ||| | ||| | ||  |||||||||| ||||    
T  29374891 ttacaggttctttggtttgcaacatcgtgggagatctggaaagaaagaaacaataggatcttcactggtaaacaatgctcaattttacaggtggtggata 29374792  T
Q  133 aaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggctt 209  Q
    ||||||| ||| |||| || ||||||||||||||||||||||| |||||||   | ||||||||||| |||||||||    
T  29374791 aaattaaatcgctgtcttttatgtggttgaaggcgaagtttccttctcttcatctcaactatcatggctggtggctt 29374715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 34237188 - 34237267
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    ||||||||||||||| ||||    | ||||||| || ||||||||||||||||||||||| |||||||||||||| ||||    
T  34237188 gtggttgaaggcgaaatttcatattattcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcatag 34237267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 40616804 - 40616734
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||| ||||||||||| ||||| | |  |||||||||||||||||| |||||||||||||||||| |||||    
T  40616804 ttcaagtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtggcttagtccgttcac 40616734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 41529387 - 41529509
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||| |||||||| || || || ||||||||||||  ||| |||    | |||||||| || | |||||||||||| |||||||| ||    
T  41529387 tacaggtggttgataagattaagtccatctcttttatgtggttgaagatgaaatttaacacgcttcccttcaattttcatggttggtgacttagtccgtt 41529486  T
Q  218 caccatgttgggtatagattaat 240  Q
    ||||||| |||| |||| |||||    
T  41529487 caccatgctgggcataggttaat 41529509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 27854911 - 27854972
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttag 211  Q
    |||| ||||||||||| ||||| | |  | ||||||||||||||||||||||||||||||||    
T  27854911 ttcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggcttag 27854972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 16560029 - 16560069
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacaggttgttcaatg 99  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  16560029 gtgggaaatatggaaagaaagaaataacaggttattcaatg 16560069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 16605633 - 16605593
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacaggttgttcaatg 99  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  16605633 gtgggaaatatggaaagaaagaaataacaggttattcaatg 16605593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 26569739 - 26569815
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||||||||||||  || | ||||||||||| || |||||||| ||||||||  |||| ||||| ||||||||    
T  26569739 atgtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtggctatgtccgttcactatgttggg 26569815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 37917944 - 37917904
Alignment:
Q  339 ggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  37917944 ggaccttttgttgtggtaatataattcattttagcctcttc 37917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 38342993 - 38343053
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggctta 210  Q
    |||| ||||||||||| |||| ||  | |||||||||||||||||||||||||||| ||||    
T  38342993 ttcaagtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtgactta 38343053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 41216383 - 41216339
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataaca 87  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||    
T  41216383 tttggtatgctactgcgtgtgaaatatggaaagaaagaaataaca 41216339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 37237976 - 37237909
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgc 110  Q
    |||||| |||||||  |||||||||||| |||||||||||||||||  | |||||||  |||||||||    
T  37237976 tttggtttgctactgtgtgggaaatatgtaaagaaagaaataacagtatcttcaatggtaaagagtgc 37237909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 38153939 - 38154010
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||||||| ||| |||||  |||||||||||||||| ||| | |||||||||||||  |||||| ||||    
T  38153939 gtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgttcaccttgtt 38154010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 43026208 - 43026157
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    |||||||||| || |  |||||||||||||||||||||| ||||||||||||    
T  43026208 ttgtgctaggaagaagtttttgatgtggtaatataattcattttagcctctt 43026157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 47543365 - 47543528
Alignment:
Q  60 tgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggt 159  Q
    ||||||||||| || |||||||| || |||||||| |||| |||||| ||  |  |  | |||||||| || || ||||||||| |  | || | |||||    
T  47543365 tgggaaatatggaaggaaagaaacaataggttgtttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggt 47543464  T
Q  160 tgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
    ||||| ||||||||   ||||||||||| || |||||||| || ||||||||||| || |||||    
T  47543465 tgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtccgtttaccat 47543528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 7694408 - 7694374
Alignment:
Q  195 catggttggtggcttagtcccttcaccatgttggg 229  Q
    |||||||||||||||||||||||||| ||||||||    
T  7694408 catggttggtggcttagtcccttcactatgttggg 7694374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 29374589 - 29374555
Alignment:
Q  338 aggaccttttgatgtggtaatataattcgttttag 372  Q
    |||||||||||||||||||||||||||| ||||||    
T  29374589 aggaccttttgatgtggtaatataattcattttag 29374555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 14315569 - 14315512
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatga 100  Q
    |||||| ||||||| |||||||||| || || ||||||||||||||| | ||||||||    
T  14315569 tttggtttgctactgcgtgggaaatttggaaggaaagaaataacaggatattcaatga 14315512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 42017855 - 42017900
Alignment:
Q  189 aactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    ||||||||||| |||||||||||||| ||||| |||||||| ||||    
T  42017855 aactatcatggatggtggcttagtccgttcactatgttgggcatag 42017900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 25845647 - 25845771
Alignment:
Q  120 caggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttca 219  Q
    |||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| | ||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtccataca 25845746  T
Q  220 ccatgttgggtatagattaattgtt 244  Q
    |||| ||||| || |||||||||||    
T  25845747 ccattttgggcattgattaattgtt 25845771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 33692999 - 33692880
Alignment:
Q  121 aggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||||| |||||||| || || || ||||||||||||| ||| |||    | |||||||| |||| |||||||||||||||||| || |||||    
T  33692999 aggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaactttcatggttggtggcttagcccgttcac 33692900  T
Q  221 catgttgggtatagattaat 240  Q
    |||| |||| |||| |||||    
T  33692899 catgctgggcataggttaat 33692880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 16124998 - 16124929
Alignment:
Q  297 tgtgactctggtgtcttt-ctctggcatacattgtgctagggaggaccttttgatgtggtaatataattc 365  Q
    ||||| |||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||    
T  16124998 tgtgattctggtgtcttttctctgacataccttgtgttagggaggaccttttgatatggtaatataattc 16124929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 19979348 - 19979287
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttag 211  Q
    |||| ||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||    
T  19979348 ttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggcttag 19979287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 25408767 - 25408888
Alignment:
Q  124 tggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
    |||| ||||| |||||||| ||  | ||| |||||||||||||||| ||  | ||  || |||| || ||||||||||||||||||||||| || |||||    
T  25408767 tggtcgataagattaagtctataacattcgtgtggttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccat 25408866  T
Q  224 gttgggtatagattaattgtta 245  Q
    |||||||||||  |||||||||    
T  25408867 gttgggtataggctaattgtta 25408888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 29542452 - 29542393
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  29542452 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 29542393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 41878726 - 41878785
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||    |||||||||||||||||||||||||||||||||||||    
T  41878726 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 41878785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 6925948 - 6926044
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||| || |||||||||| | || | | || |||||| |||| |||||||  | ||||||||||||| |||||||| ||||||||||||||    
T  6925948 tacaggtggtggacaaaattaagttgttgacttacaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 6926044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 51346403 - 51346347
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatg 99  Q
    |||||||||||||| |||| |||||||| |||||||||| ||||||||| |||||||    
T  51346403 tttggtatgctactgcgtgagaaatatggaaagaaagaattaacaggttattcaatg 51346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 53876983 - 53876887
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||| || |||||||||| | || | |||| |||||| |||| |||||||  | ||||||||||||| |||||||| ||||||||| ||||    
T  53876983 tacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttggtcc 53876887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 42806355 - 42806289
Alignment:
Q  154 tgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||||||||||| |||||||    ||||||| |||||||||||||| |||||||||||||| |||||    
T  42806355 tgtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccattcac 42806289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 44781835 - 44781767
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgcc 111  Q
    |||||| |||||||  ||||||||| || |||||||||||||||||  | |||||||||||||| ||||    
T  44781835 tttggtttgctactgtgtgggaaatttggaaagaaagaaataacagaattttcaatgacaaagaatgcc 44781767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 47161022 - 47161078
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttag 211  Q
    ||||||||||| ||||||||| |||||||| || || || |||||||||||||||||    
T  47161022 gtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttag 47161078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 22534037 - 22534096
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||    ||||||| |||||||||||||| ||||||||||||||    
T  22534037 gtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtcc 22534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 35503849 - 35503916
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgc 110  Q
    |||||| |||||||   ||||||||||| |||||||||||||||||| | ||||||| ||| ||||||    
T  35503849 tttggtttgctactgtttgggaaatatggaaagaaagaaataacaggattttcaatggcaacgagtgc 35503916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 37537293 - 37537238
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggctta 210  Q
    ||||||||||| ||||||  | |||||||||||||  |||||||||||||||||||    
T  37537293 gtggttgaaggtgaagttcgcttctcttccctttacttatcatggttggtggctta 37537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 6894228 - 6894286
Alignment:
Q  156 tggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||| ||||  | |||||||||| || ||||||||||||||| |||||||    
T  6894228 tggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtcc 6894286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 36803190 - 36803264
Alignment:
Q  153 atgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttg 227  Q
    ||||||||||||||||||||| |  || |||| || || | ||||| ||||||||||||||| ||||| ||||||    
T  36803190 atgtggttgaaggcgaagtttaccactattcctttcaattttcatgcttggtggcttagtccgttcacaatgttg 36803264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 31050869 - 31050930
Alignment:
Q  318 tggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    ||||| || |||||||||| ||||| ||||||  |||||||||| ||| |||||||||||||    
T  31050869 tggcacaccttgtgctaggaaggacattttgagttggtaatatatttcattttagcctcttc 31050930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 42674128 - 42674100
Alignment:
Q  189 aactatcatggttggtggcttagtccctt 217  Q
    |||||||||||||||||||||||||||||    
T  42674128 aactatcatggttggtggcttagtccctt 42674100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 220
Target Start/End: Original strand, 4889357 - 4889549
Alignment:
Q  28 caattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggt 127  Q
    |||||||||| ||| |||||| ||| | |||||| ||||| |  |||||||||||||||||||| ||||||  |||||| ||| | ||     | |||||    
T  4889357 caattttacaagttatttggtttgcaattacgtgagaaatttagaaagaaagaaataacaggttattcaatagcaaagaatgctcaatgtcttatgtggt 4889456  T
Q  128 tgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||||||||||||||| |  | ||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||||    
T  4889457 tgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtccattcac 4889549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 44675007 - 44675219
Alignment:
Q  33 ttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgata 132  Q
    ||||||||| |||||| ||| |||  ||| ||||| |  ||||||| |||||||||||| ||||||| | |||| ||| | ||| | || ||||||||||    
T  44675007 ttacaggttatttggtttgcaactgtgtgagaaatttataaagaaataaataacaggttattcaatggctaagaatgctcgatcgtgcaagtggttgata 44675106  T
Q  133 aaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtat 232  Q
    | |||||| |  |  | |||||||||||||||||||| ||| | || |||||||| || ||||||||||||||||||||||| || | ||||||||| ||    
T  44675107 agattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatcatgttgggcat 44675206  T
Q  233 agattaattgtta 245  Q
    ||| |||| ||||    
T  44675207 agactaatagtta 44675219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 34703681 - 34703474
Alignment:
Q  21 tgtcgctcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctac 120  Q
    ||||| ||||||||||| ||| | ||||||||||||   ||||||||||| |||||||||||||||| ||| ||||  || | |   ||| |  | || |    
T  34703681 tgtcgatcaattttacaagttatctggtatgctactgtctgggaaatatggaaagaaagaaataacatgttattcacagatagaacatgctcggttcttc 34703582  T
Q  121 aggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||||| ||||||||  |  | || ||||||||||||||||| | | || ||||||||||||||| ||||||||||||||| ||| | |||||    
T  34703581 aggtggttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggctaagttcgttcac 34703482  T
Q  221 catgttgg 228  Q
    ||||||||    
T  34703481 catgttgg 34703474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 12688212 - 12688271
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  12688212 gtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 229
Target Start/End: Complemental strand, 22583383 - 22583181
Alignment:
Q  27 tcaattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtgg 126  Q
    |||||| | ||||| ||||||| |||||  | ||||||||| || || |||||||| ||||   | |||||||| ||||| ||| | ||  |||||||||    
T  22583383 tcaattatgcaggtgctttggtttgctatcatgtgggaaatttggaaggaaagaaacaacaaaatattcaatgataaagaatgctcgatgttacaggtgg 22583284  T
Q  127 ttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    | ||||| || |||||  | || |||||||||||||||||||| ||| | ||||||||||| |||||  || | |||||||||||||| || || |||||    
T  22583283 tagataagatgaagtcactttccttcatgtggttgaaggcgaaatttgcctctcttcccttaaactagtatagatggtggcttagtccatttactatgtt 22583184  T
Q  227 ggg 229  Q
    |||    
T  22583183 ggg 22583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 26260785 - 26260859
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    ||||||||||||||||||| | ||||||||||| || |||||||| |||||||||||||| || |||||||||||    
T  26260785 gtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttggg 26260859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 28442210 - 28442151
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||    
T  28442210 gtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtcc 28442151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 9484783 - 9484953
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtgg 158  Q
    ||||||||| ||||||||||||||||||| | | |||||||  ||||| ||  | ||  | ||  | || ||||| |||||||| || || ||| |||||    
T  9484783 gtgggaaatttgaaaagaaagaaataacaagatattcaatggtaaagaatgttcgatattgcaaatagtagataagattaagtcaatttccttcttgtgg 9484882  T
Q  159 ttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    ||||||||||| |||   ||||||||||| || ||||||||||||||| ||||||  ||||| ||||||||    
T  9484883 ttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtcagttcacaatgttggg 9484953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 5411768 - 5411832
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||| ||||||||||| |||||||  | ||||||||||||||||||||||||| |||||||||||    
T  5411768 ttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggcttagtcc 5411832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 48973648 - 48973744
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||||||||| || |||||||||| | || | |||| |||||| |||| |||||||  | ||||||||||||| |||||||| ||||||||||||||    
T  48973648 tacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtcc 48973744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 245
Target Start/End: Original strand, 52626451 - 52626630
Alignment:
Q  64 aaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaa 163  Q
    |||| ||||||||||||||||||||  | |  ||||||||||| ||| | ||  | |||||| ||||||| |||||| | ||    |||||||||||| |    
T  52626451 aaatctgaaaagaaagaaataacagactatctaatgacaaagaatgctcgattatgcaggtgattgataagattaagcctataa--ttcatgtggttgga 52626548  T
Q  164 ggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaattgtta 245  Q
    ||| || ||    ||||||||||| || ||||||||||||||||||||||| || ||||| ||| ||||||  |||||||||    
T  52626549 ggcaaaattcgtttctcttcccttcaattatcatggttggtggcttagtccatttaccatattgcgtataggctaattgtta 52626630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 30428504 - 30428457
Alignment:
Q  328 tgtgctagggaggaccttttgatgtggtaatataattcgttttagcct 375  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  30428504 tgtgctagggaggacattttgttgtggtaatataattcattttagcct 30428457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 51800488 - 51800539
Alignment:
Q  59 gtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgc 110  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||||||||    
T  51800488 gtgggaaatatggaaagaaagaaataacaggattttcaatgataaagagtgc 51800539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 25392507 - 25392313
Alignment:
Q  35 acaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaa 134  Q
    ||||||| |||||| ||||||||| |||||||| || ||||||||| |||||| ||| ||||| | |||||| ||     |  | ||| || |||||||     
T  25392507 acaggttatttggtttgctactacttgggaaatttggaaagaaagagataacaagttattcaaaggcaaagaatgtttggtaatgcagatgattgataag 25392408  T
Q  135 attaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttggg 229  Q
    ||||||||| |  | |  ||||||||||||||||||||| | | | ||||||| || |||||| ||| |||||||||| | || |||||| ||||    
T  25392407 attaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcattgttagtggcttagttcgtttaccatgatggg 25392313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 36098660 - 36098606
Alignment:
Q  180 cttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatag 234  Q
    |||||||| || |||||||| |||||||||||||| |||||||||||||| ||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcatag 36098606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 44653935 - 44653858
Alignment:
Q  300 gactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    ||||||||||| |||| || |||||| || ||||| |||| |||||||||| |||||||||||||  ||||||||||||    
T  44653935 gactctggtgtttttccctagcataccttatgctacggag-accttttgatatggtaatataatttattttagcctctt 44653858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 40708601 - 40708441
Alignment:
Q  62 ggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcgatgtcgttcatgtggttg 161  Q
    |||||| ||||||||||||||||||| ||| || ||||  ||||| ||||  ||  | |||||||| || |||||||||||  || | ||||||||||||    
T  40708601 ggaaatttgaaaagaaagaaataacaagttatttaatggtaaagaatgccagattgtgcaggtggtagacaaaattaagtctctgactttcatgtggttg 40708502  T
Q  162 aaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccat 223  Q
     ||| ||| | |   ||||||||||| || ||||||| | ||||||||||||| || |||||    
T  40708501 -aggtgaaatatgtttctcttcccttcaattatcatgttcggtggcttagtccgtttaccat 40708441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 33136283 - 33136223
Alignment:
Q  45 tggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaag 105  Q
    |||| ||||||||||||||||||||| ||||||| ||| | |||||| |||||||| ||||    
T  33136283 tggtttgctactacgtgggaaatatggaaagaaataaacagcaggttattcaatgataaag 33136223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 4889650 - 4889701
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcctctt 378  Q
    |||||||||||||  ||||||||||||| |||||||||| ||||||| ||||    
T  4889650 ttgtgctagggagacccttttgatgtggcaatataattcattttagcatctt 4889701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 48610979 - 48610916
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaaga 106  Q
    ||||||||||||||  | |||||||||| ||||||||||||| |||  | ||||||||||||||    
T  48610979 tttggtatgctactgtgggggaaatatggaaagaaagaaatagcagaattttcaatgacaaaga 48610916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 28400552 - 28400594
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||| |||||||||||||| |||||||||||||| |||||    
T  28400552 ctcttccttttaactatcatgggtggtggcttagtccattcac 28400594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 31069642 - 31069728
Alignment:
Q  118 tacaggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggt 204  Q
    |||||||||| || || ||||||||  | || |||||||||||||||||||| ||| | |||||||| || || |||||||| ||||    
T  31069642 tacaggtggtagacaagattaagtcattttccttcatgtggttgaaggcgaaatttgcctctcttccattaaattatcatggatggt 31069728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 45718390 - 45718423
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttag 211  Q
    ||||||||||||| ||||||||||||||||||||    
T  45718390 ctcttccctttaattatcatggttggtggcttag 45718423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 6723871 - 6723835
Alignment:
Q  60 tgggaaatatgaaaagaaagaaataacaggttgttca 96  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  6723871 tgggaaatatggaaagaaagaaacaacaggttgttca 6723835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 21523884 - 21523965
Alignment:
Q  145 tgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  21523884 tgtcattcatgtggttgaaagcgaagtttccatctcttcccttcaactatcatggttggtgacttagttccttcaccatgtt 21523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 21524003 - 21524082
Alignment:
Q  297 tgtgactctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataattcgttttagcctc 376  Q
    ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||| ||||||||||    
T  21524003 tgtgactctggtgtctttctctgacataccttgtgttaggaaggaccttttgatgtggtaatataattcattttagcctc 21524082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 39435640 - 39435468
Alignment:
Q  33 ttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgata 132  Q
    |||||||||||||||| ||| | |  ||| ||||| || |||||||||||||||| ||| |||||||||||||| ||| |  |  | |||||||||||||    
T  39435640 ttacaggttctttggtttgcaagtgtgtgagaaatttggaaagaaagaaataacatgttattcaatgacaaagaatgctcggttttgcaggtggttgata 39435541  T
Q  133 aaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtgg 206  Q
    | ||||||||  |   ||||||||||||||||||||| ||| | |||||| ||||| | |||||||||||||||    
T  39435540 agattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctctt-cctttcattatcatggttggtgg 39435468  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 8462613 - 8462520
Alignment:
Q  120 caggtggttgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtc 213  Q
    |||||||||||||| ||||||||  |  | |||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtc 8462520  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 37929141 - 37929212
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  37929141 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgtt 37929212  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 9060672 - 9060846
Alignment:
Q  30 attttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttg 129  Q
    ||||||||||||||||||| ||| || | |||||| ||||| ||||| ||||| || ||| | ||||||   ||| | ||| | ||  | ||||||||||    
T  9060672 attttacaggttctttggtttgcaacaatgtgggagatatggaaagagagaaacaataggctcttcaatagtaaacattgctcaattttgcaggtggttg 9060771  T
Q  130 ataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggt 204  Q
    |||||||||||||| | || |   | ||||||||||||||||||||||| |||| | ||||||||||||| ||||    
T  9060772 ataaaattaagtcgctttcttatttctggttgaaggcgaagtttccatcacttcacgttaactatcatggatggt 9060846  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 459263 - 459200
Alignment:
Q  43 tttggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaaga 106  Q
    |||||||||||||| |||||||||||||||||||| |||||| |||||| ||||||| ||||||    
T  459263 tttggtatgctactgcgtgggaaatatgaaaagaaggaaatatcaggttattcaatggcaaaga 459200  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 7179100 - 7179036
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    |||| ||||||||||| |||||||  | ||||||||||||||||||||| |||||||||||||||    
T  7179100 ttcaagtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggcttagtcc 7179036  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 10183457 - 10183539
Alignment:
Q  150 ttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtat 232  Q
    ||||||||||| |||||||| ||| | ||| ||||||| |||||| |||| |||||||||||||| || || |||||||||||    
T  10183457 ttcatgtggttaaaggcgaaatttgcctcttttcccttaaactataatggatggtggcttagtccatttactatgttgggtat 10183539  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 38233236 - 38233301
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||| ||||| | |||||||||||||||| |||||||||||||||  |||||| |||||    
T  38233236 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcac 38233301  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 16840208 - 16840267
Alignment:
Q  28 caattttacaggttctttggtatgctactacgtgggaaatatgaaaagaaagaaataaca 87  Q
    |||||||||||||| | |||| ||| |||||||||||||| || ||||||||||||||||    
T  16840208 caattttacaggttatctggtttgcaactacgtgggaaatttggaaagaaagaaataaca 16840267  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 31686493 - 31686422
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 226  Q
    ||||||||||| ||| |||||  |||||||||||||||| ||||| ||| |||||||||| |||||| ||||    
T  31686493 gtggttgaaggagaaatttcctactcttccctttaactaccatgggtggcggcttagtccgttcaccttgtt 31686422  T

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Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 41255078 - 41255043
Alignment:
Q  179 tcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||||||||||||||||||||||||||||||||||    
T  41255078 tcttccctttaactatcatggttggtggcttagtcc 41255043  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 38685817 - 38685859
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  38685817 ctcttccctttaactatcatggttggtggattagtccgttcac 38685859  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 5048545 - 5048605
Alignment:
Q  180 cttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaat 240  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||  |||| |||| |||||    
T  5048545 cttcccttcaactttcatggttggtggcttagtccgttcaccatactgggcataggttaat 5048605  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 43776437 - 43776489
Alignment:
Q  327 ttgtgctagggaggaccttttgatgtggtaatataattcgttttagcctcttc 379  Q
    |||||||||| ||| | ||||| |||||||||||||||| |||||||||||||    
T  43776437 ttgtgctaggaaggccattttgttgtggtaatataattcattttagcctcttc 43776489  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 33191245 - 33191203
Alignment:
Q  178 ctcttccctttaactatcatggttggtggcttagtcccttcac 220  Q
    |||||||||| || ||||||||||||||||||||||| |||||    
T  33191245 ctcttcccttcaattatcatggttggtggcttagtccgttcac 33191203  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 5752015 - 5752095
Alignment:
Q  155 gtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtataga 235  Q
    ||||||||||||||||| | | ||||||||| | || |||||||| |||| ||||||  | |||||||| ||||| |||||    
T  5752015 gtggttgaaggcgaagtattcctctcttcccctcaattatcatggctggtagcttagctcgttcaccattttgggcataga 5752095  T

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Target: scaffold0047 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 245
Target Start/End: Complemental strand, 64462 - 64262
Alignment:
Q  45 tggtatgctactacgtgggaaatatgaaaagaaagaaataacaggttgttcaatgacaaagagtgccctatcctacaggtggttgataaaattaagtcga 144  Q
    |||| ||| |||||||| ||||| || |||||||||||||||||||| || |||| ||| ||  |  | || |  |||||||| ||||||||||||||      
T  64462 tggtttgcaactacgtgtgaaatttggaaagaaagaaataacaggttatttaatggcaaggatagttcaattcctcaggtggtagataaaattaagtccc 64363  T
Q  145 tgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgttgggtatagattaattgtt 244  Q
    |  | ||| |||||||||||| ||| |  || |||||| |||| || ||||||| ||||||||||||||| |||||||| ||||| |||| |||| ||||    
T  64362 tcgctttcttgtggttgaaggagaaatacccttctctttccttcaattatcatgcttggtggcttagtcctttcaccattttgggcataggttaactgtt 64263  T
Q  245 a 245  Q
    |    
T  64262 a 64262  T

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Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 24489 - 24573
Alignment:
Q  128 tgataaaattaagtcgatgtcgttcatgtggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagt 212  Q
    |||||||||||||||| |  | |||||||||||||||||||| ||||| ||||||||||| ||  ||||| |||||||| |||||    
T  24489 tgataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagt 24573  T

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Target: scaffold0204; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 24648 - 24711
Alignment:
Q  301 actctggtgtctttctctggcatacattgtgctagggaggaccttttgatgtggtaatataatt 364  Q
    |||||||||| ||||  |||||| | || |||||||||| ||||||||||||||||||||||||    
T  24648 actctggtgtttttccttggcatgccttatgctagggagaaccttttgatgtggtaatataatt 24711  T

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Target: scaffold0225 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 6540 - 6598
Alignment:
Q  156 tggttgaaggcgaagtttccatctcttccctttaactatcatggttggtggcttagtcc 214  Q
    ||||| |||| ||||||| || ||||||||||||||||||||||||||||||| |||||    
T  6540 tggttaaaggtgaagtttacaactcttccctttaactatcatggttggtggctaagtcc 6598  T

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