View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19937_low_9 (Length: 251)
Name: NF19937_low_9
Description: NF19937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19937_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 11039293 - 11039515
Alignment:
| Q |
14 |
atatgaatattgttagcatggcccacaacaaacagttccatatgatgagaggaaattatttggaagctgttatagactatagtcacagtgaatttgaaaa |
113 |
Q |
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| T |
11039293 |
atatgaatattgttagcatggcccacaacaaacagttccatatgatgagaggaaattatttggaagctgttatagactatagtcacagtgagtttgaaaa |
11039392 |
T |
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| Q |
114 |
atttctataaacacaatcttagacagtactattgctcaagaatcaatatcatgaacacttattatcatgttatgggattattgttgctcgtattttacct |
213 |
Q |
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| T |
11039393 |
atttctataaacacaatcttagacggtactattgctcaagaatcaatatcatgaacacttattatcatgttatgggattattgttgctcgtatgttacct |
11039492 |
T |
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| Q |
214 |
taatacgttggtggtggagtttg |
236 |
Q |
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| T |
11039493 |
taatacgttggtggtggagtttg |
11039515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 11024392 - 11024459
Alignment:
| Q |
151 |
aagaatcaatatcatgaacacttattatcatgttatgggattattgttgctcgtattttaccttaata |
218 |
Q |
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| T |
11024392 |
aagaatcaatatcatgaacacttattctcatgttatgggatggttgttgttcgtgttttaccttaata |
11024459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 10976666 - 10976754
Alignment:
| Q |
91 |
tatagtcacagtgaatttgaaaaatttctataaacacaatcttagaca--gtactattgctcaagaatcaatatcatgaacacttattat |
178 |
Q |
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| T |
10976666 |
tatagtgaaagtgagtttgaaaaattcctataaacagagtca-agacatagtactattgctcaagaatcaataacatgaacacttattat |
10976754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 10906266 - 10906354
Alignment:
| Q |
91 |
tatagtcacagtgaatttgaaaaatttctataaacacaatcttagaca--gtactattgctcaagaatcaatatcatgaacacttattat |
178 |
Q |
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| T |
10906266 |
tatagtgaaagtgagtttgaaaaattcctataaacagagt-taagacatagtactattgctcaagaatcgataccatgaacacttattat |
10906354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 10989920 - 10989960
Alignment:
| Q |
138 |
agtactattgctcaagaatcaatatcatgaacacttattat |
178 |
Q |
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| T |
10989920 |
agtactattactcaagaatcaataccatgaacactcattat |
10989960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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