View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19938_low_1 (Length: 491)
Name: NF19938_low_1
Description: NF19938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19938_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 25745676 - 25746149
Alignment:
| Q |
1 |
ttgccaccactagccaataaattgccccttttcgaccattttaaaccgcagatttctgctctgtgtgtttttatcctcgaaacctcatttcttcttgctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25745676 |
ttgccaccactagccaataaattgccccttttcgaccattttaaaccgcagatttctgctctgtgtgtttttatcctcaaaacctcatttcttcttgctc |
25745775 |
T |
|
| Q |
101 |
ttactgcacacaagaacataatacatcagtacgttaagttacaacattttatcaaaagctttatgtattcgtacataaaatacatcgaaaagatttaaag |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25745776 |
ttactgcacacaagaacataatacatcattacgttaagttacagcattttatcaaaagctttatgtattcgtacataaaatacatcgaaaagatttaaag |
25745875 |
T |
|
| Q |
201 |
agaagaactaaatctaattaccatcatggttgattatagatttgtcgtggcctccggaagttaaaatacgattattattattccatgctagagtaggtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |
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| T |
25745876 |
agaagaactaaatctaattaccatcatggttgattatagatttgtcgtggcctccggaagttaaaatacg---attattattccatgctagagttgctat |
25745972 |
T |
|
| Q |
301 |
cctttgagtatgaccttcaagatttcttactagcttggaagtctcggcatcccagatttgaagctgagagtgcaaaaatcctgttgccacatattttgca |
400 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
25745973 |
cctttgagcatgaccttcaagatttcttactagcttggaagtctcggcatcccagatttgaagttgagagtgcacaaatcctgttgccacatattttgca |
25746072 |
T |
|
| Q |
401 |
tcctcagaccaggaaacacttgttggataattattgccattgactttaaacaacctagatacatcagtagtaactga |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25746073 |
tcctcagaccaggaaacacttgttggataattattgccattgactttaaacaacctagatacatcagtagtaactga |
25746149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 398
Target Start/End: Original strand, 18929334 - 18929518
Alignment:
| Q |
211 |
aatctaattaccatcatggttgattatagatttgtcgtggcctccggaagttaaaatacgattattattattccatgctagagtaggtatcctttgagta |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||| ||| |||||||||||| || |||| ||||||||||||| | |||| ||||| || |
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| T |
18929334 |
aatctaattaccatcatggttgattatcgattggtcatggcttccagaagttaaaatatgacggttat---tccatgctagagttgctatcttttgacta |
18929430 |
T |
|
| Q |
311 |
tgaccttcaagatttcttactagcttggaagtctcggcatcccagatttgaagctgagagtgcaaaaatcctgttgccacatattttg |
398 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| || |||| ||||||||||||| |||| |
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| T |
18929431 |
tgaccttcaagatttcttactagcttggaagtctcagcatcccagagttgaagttgagagttcacaaattctgttgccacataatttg |
18929518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18929097 - 18929212
Alignment:
| Q |
1 |
ttgccaccactagccaataaattgccccttttcgaccattttaaaccgcagatttctgctctgtgtgtttttatcctcgaaacctcatttcttcttgctc |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| |||||||| | || |||| |||||| ||||| || |||||| ||||||||||||||| |
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|
| T |
18929097 |
ttgccaccacttgccaataaattgctgcttttcgaccatttcaaaccgcaaacttatgctttgtgtgcttttacccgagaaaccacatttcttcttgctc |
18929196 |
T |
|
| Q |
101 |
ttactgcacacaagaa |
116 |
Q |
| |
|
| |||||| ||||||| |
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|
| T |
18929197 |
taactgcatacaagaa |
18929212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 393
Target Start/End: Original strand, 36841090 - 36841204
Alignment:
| Q |
279 |
tattccatgctagagtaggtatcctttgagtatgaccttcaagatttcttactagcttggaagtctcggcatcccagatttgaagctgagagtgcaaaaa |
378 |
Q |
| |
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||||||| || ||||| | |||| ||||| ||||||||||||||||||| || |||||||||||| |||||||||| |||||| ||||||| || ||| |
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| T |
36841090 |
tattccaagccagagttgctatcttttgactatgaccttcaagatttctacctggcttggaagtcttagcatcccagagttgaagttgagagttcacaaa |
36841189 |
T |
|
| Q |
379 |
tcctgttgccacata |
393 |
Q |
| |
|
||||||||||||||| |
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|
| T |
36841190 |
tcctgttgccacata |
36841204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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