View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19938_low_2 (Length: 387)
Name: NF19938_low_2
Description: NF19938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19938_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 51576629 - 51576997
Alignment:
| Q |
16 |
cagttaaaagtagtcagtgttgttagatggcagcgccatggtcgcattctgccatggagtggcagannnnnnnaaaacagccataggaaattcgtaaagg |
115 |
Q |
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| T |
51576629 |
cagttacaagtagtcagtgttgttagatggcagcgccatggtcgcattctgccatggagtggcagattttttgaaaacagccataggaaatttgtaaagg |
51576728 |
T |
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| Q |
116 |
aatgcccaccatggcaaaccttcggccatcgataacactgctagtagttacttctgaattccctttatattatggtaatagttttggttgatattttaaa |
215 |
Q |
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| T |
51576729 |
aatgcccaccatggcaaaccttcggccatcgataacacgg-tagtagttacttctgaattccctttatattatgttaatagttttggttgatattttaaa |
51576827 |
T |
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| Q |
216 |
tggtttgagatgttctcatttcttccccccacttattttgagatgtattcagctcatgaagcgaagttttctcgcaccttgcagaatttgttcagaatct |
315 |
Q |
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| T |
51576828 |
tggt--gagatgttctcatttcttccccccacttattttgagatgtattcagctcatgaagcgtagttttctcgcaccttgcagattttgttcagaatct |
51576925 |
T |
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| Q |
316 |
tatcgataatcggcaacatgttgaagctgttagattcatttgtgcttgtaacattaccaacaagaatcaatc |
387 |
Q |
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| T |
51576926 |
tatcgataatcagcaacatgttgaagctgttagattcatttgtgcttgtaacattaccaacaagaatcaatc |
51576997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 33153126 - 33153220
Alignment:
| Q |
293 |
cttgcagaatttgttcagaatcttatcgataatcggcaacatgttgaagctgttagattcatttgtgcttgtaacattaccaacaagaatcaatc |
387 |
Q |
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| T |
33153126 |
cttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcatatgtgcttataacgtggccaacaagaatcaatc |
33153220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 354
Target Start/End: Original strand, 2363534 - 2363617
Alignment:
| Q |
271 |
atgaagcgaagttttctcgcaccttgcagaatttgttcagaatcttatcgataatcggcaacatgttgaagctgttagattcat |
354 |
Q |
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| T |
2363534 |
atgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcat |
2363617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 360
Target Start/End: Complemental strand, 39188387 - 39188309
Alignment:
| Q |
282 |
ttttctcgcaccttgcagaatttgttcagaatcttatcgataatcggcaacatgttgaagctgttagattcatttgtgc |
360 |
Q |
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| T |
39188387 |
ttttcttgcacctggcagattttgtacagagtcttatcaagaaacagcaatatgatgaagctgttagattcagttgtgc |
39188309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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