View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19938_low_4 (Length: 334)
Name: NF19938_low_4
Description: NF19938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19938_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 37831737 - 37832045
Alignment:
| Q |
10 |
aacaaaatttcttccttcactcactatactattattcatttgccataagctaagagacagaaaagcactccactacaaatcagacaatacaaaaattcag |
109 |
Q |
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| T |
37831737 |
aacaaaatttcttccttcactcactatactattattcatttgccataagctaagagacagaaaagcactccactacaaatcagacaatacaaaaattcag |
37831836 |
T |
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| Q |
110 |
acatacaatccaaagttacattttgtctttttgtttcctctcacattggaaaaaatgatattaattccaatattttcttccatgttccttttcacaatca |
209 |
Q |
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| T |
37831837 |
acatacaatccaaagttacattttgtctttttgtttcctctcacattggaaaaaatgatattaattccaatattttcttccatgttccttttcacaatca |
37831936 |
T |
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| Q |
210 |
gcagatttaatgaaaaccgtacgaggatcacgttacagtgattttatccacaaactatggatcaaatttccnnnnnnncacattcccattaattccatca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37831937 |
gcagatttaatgaaaaccgtacgaggatcacgttacagtgattttatccacaaactatggatcaaatttcctttttttcacattcccattaattccatca |
37832036 |
T |
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| Q |
310 |
ctatctcat |
318 |
Q |
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||||||||| |
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| T |
37832037 |
ctatctcat |
37832045 |
T |
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