View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19938_low_5 (Length: 328)
Name: NF19938_low_5
Description: NF19938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19938_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 6822018 - 6822323
Alignment:
| Q |
14 |
catttagatcagcggtttgcctataattttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaaggaatccccttgtctgttcttt |
113 |
Q |
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| T |
6822018 |
catttagatcagcggtttgcctataattttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaaggaatccccttgtctgttcttt |
6822117 |
T |
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| Q |
114 |
tctttgataagggagagggaagtaaaccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttcctaaagaccagagttcttga |
213 |
Q |
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| T |
6822118 |
tctttgataagggagagggaagtaaaccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttcctaaagaccagagttcttga |
6822217 |
T |
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| Q |
214 |
tcttgaatgcatattcagaccacagttgcctaagaatttaagtaagctcaataatctcaagtatcttagcttgagatggacttacctggaggaattaccc |
313 |
Q |
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| T |
6822218 |
tcttgaatgcatattcagaccacagttgcctaagaatttaagtaagctcaataatctcaagtatcttagcttgagatggacttacctggaggaattaccc |
6822317 |
T |
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| Q |
314 |
ctatgc |
319 |
Q |
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| T |
6822318 |
ctatgc |
6822323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 33 - 319
Target Start/End: Original strand, 7334337 - 7334623
Alignment:
| Q |
33 |
cctataattttgatgatgatggtcttgatgcaaactccgcacaagcattcagaaagaaaggaatccccttgtctgttcttttctttgataagggagaggg |
132 |
Q |
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| T |
7334337 |
cctatcatttttacgatcatggccttaatgaaaactcggcccaagctttcagcaagaaaggaactcccctgtctgttcttttctttgacaagcgagaggg |
7334436 |
T |
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| Q |
133 |
aagtaaaccaggagaacgtgtcgggaatatcctttcaacaggcattgcaagtgagcagttcctaaagaccagagttcttgatcttgaatgcatattcaga |
232 |
Q |
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| T |
7334437 |
atgtaaaccaggagaacatgtaggtaagatcctttcaacgagcattgcagatcagcagttcctagagaccagagttcttgatcttgaatgcatattcaga |
7334536 |
T |
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| Q |
233 |
ccacagttgcctaagaatttaagtaagctcaataatctcaagtatcttagcttgagatggacttacctggaggaattacccctatgc |
319 |
Q |
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| T |
7334537 |
ccacagttgcccaagactttaagtaagctcaataatctgaagtatcttagcttaagatggacttacttggaggaattacccccatgc |
7334623 |
T |
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