View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19938_low_6 (Length: 236)

Name: NF19938_low_6
Description: NF19938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19938_low_6
NF19938_low_6
[»] chr7 (2 HSPs)
chr7 (1-221)||(47361903-47362120)
chr7 (1-221)||(47361206-47361423)
[»] chr4 (6 HSPs)
chr4 (1-77)||(52305811-52305887)
chr4 (17-77)||(35317618-35317678)
chr4 (1-77)||(35318344-35318420)
chr4 (1-79)||(3803070-3803150)
chr4 (4-68)||(48339548-48339612)
chr4 (1-79)||(48339767-48339845)
[»] chr3 (6 HSPs)
chr3 (14-77)||(7723969-7724032)
chr3 (1-79)||(23773331-23773409)
chr3 (14-77)||(7725657-7725720)
chr3 (1-68)||(23706903-23706970)
chr3 (1-68)||(23725359-23725426)
chr3 (1-68)||(23743815-23743882)
[»] chr6 (1 HSPs)
chr6 (12-77)||(11434558-11434623)
[»] chr8 (3 HSPs)
chr8 (1-77)||(35751622-35751698)
chr8 (1-73)||(42104511-42104583)
chr8 (1-73)||(42104407-42104479)
[»] chr5 (4 HSPs)
chr5 (1-71)||(10143140-10143210)
chr5 (1-70)||(7120890-7120959)
chr5 (12-77)||(24252335-24252400)
chr5 (185-221)||(40251181-40251217)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47362120 - 47361903
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatcatcctctagaggtagatatagat 100  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47362120 ccatctatttttgatctaatagttgatgatcattctcgtcattttcatataagttagtcgttctcatagtatacatcatcctctagaggtagatatagat 47362021  T
Q  101 atagataaactagcaacattgttttttgctatggatattgctattaacttggttgagaagacatacattttttaataaatacaaataaaaatcaagttaa 200  Q
    ||||||| ||||||||||| |   |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||    
T  47362020 atagatagactagcaacatcg---tttgctatggatattgctattaacttggttgacaaaacatacattttttaataaatacaaataaaaaccaagttaa 47361924  T
Q  201 aattcttaatagactaacaac 221  Q
    ||||| |||||||||||||||    
T  47361923 aattcctaatagactaacaac 47361903  T

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Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47361206 - 47361423
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatcatcctctagaggtagatatagat 100  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  47361206 ccatctatttttgatctaatagttgatgatcattctcgtcattttcatataagttagtcattctcatagtatacatcatcctctagagatagatatagat 47361305  T
Q  101 atagataaactagcaacattgttttttgctatggatattgctattaacttggttgagaagacatacattttttaataaatacaaataaaaatcaagttaa 200  Q
    ||||||| |||| ||||||||   ||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  47361306 atagatagactaacaacattg---tttgctatgaatattgctatcaacttggttgacaagacatacattttttaataaatacaaataaaaaccaagttaa 47361402  T
Q  201 aattcttaatagactaacaac 221  Q
    ||||| |||||||||||||||    
T  47361403 aattcctaatagactaacaac 47361423  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52305887 - 52305811
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    |||| ||||| ||||||||| ||||||||||||| || ||||| ||||||||| | |||||||||| ||||||||||    
T  52305887 ccatttatttttaatctaatggttgatgatcattctcatcattctcatataagattgtcattctcacagtatacatc 52305811  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 35317678 - 35317618
Alignment:
Q  17 taatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    |||| ||||||||||||||||  |||| ||||||||| |||||||||||||| ||||||||    
T  35317678 taatggttgatgatcattttcaccattctcatataagatagtcattctcatattatacatc 35317618  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35318344 - 35318420
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    |||| ||||| ||||||||| ||||||||||||| ||  |||| | ||||||| |||||||||||||| ||||||||    
T  35318344 ccatttatttttaatctaatggttgatgatcattctcaccattcttatataagatagtcattctcatattatacatc 35318420  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3803150 - 3803070
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctc--atagtatacatcat 79  Q
    |||| ||||||| ||||| | ||||||||| ||| |  ||||||||||||||| |||||||||||  ||||||||||||||    
T  3803150 ccatttatttatgatctattggttgatgattattcttatcattttcatataagatagtcattctcttatagtatacatcat 3803070  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 48339612 - 48339548
Alignment:
Q  4 tctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcata 68  Q
    ||||||||| ||||||  |||||| |||||| || ||||| ||||||||| ||||||||||||||    
T  48339612 tctatttatgatctaacggttgataatcattctcatcattctcatataagatagtcattctcata 48339548  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48339767 - 48339845
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatcat 79  Q
    |||||||||||| ||||||| ||||||||||||| |   |||| |||| | || |||||||||||||| || |||||||    
T  48339767 ccatctatttatgatctaatggttgatgatcattctaaacattctcatgtgagatagtcattctcataataaacatcat 48339845  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 7724032 - 7723969
Alignment:
Q  14 atctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    ||||||| ||||||||||||| ||  |||| ||||||||| |||||||||||||| ||||||||    
T  7724032 atctaatggttgatgatcattctcaccattctcatataagatagtcattctcatattatacatc 7723969  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23773409 - 23773331
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatcat 79  Q
    |||||||||| | || |||| |||| | || |||||| ||||||||||||||| ||||||||||||||  |||||||||    
T  23773409 ccatctattttttatttaatggttggtaattattttcatcattttcatataagatagtcattctcatatgatacatcat 23773331  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 7725657 - 7725720
Alignment:
Q  14 atctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    ||||||| |||||||||||||  |  |||| ||||||||| |||||||||||||| ||||||||    
T  7725657 atctaatggttgatgatcattcacaccattctcatataagatagtcattctcatactatacatc 7725720  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23706970 - 23706903
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcata 68  Q
    |||||||||| | || |||| |||| | || |||||| ||||||||||||||| ||||||||||||||    
T  23706970 ccatctattttttatttaatggttggtaattattttcatcattttcatataagatagtcattctcata 23706903  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23725426 - 23725359
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcata 68  Q
    |||||||||| | || |||| |||| | || |||||| ||||||||||||||| ||||||||||||||    
T  23725426 ccatctattttttatttaatggttggtaattattttcatcattttcatataagatagtcattctcata 23725359  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23743882 - 23743815
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcata 68  Q
    |||||||||| | || |||| |||| | || |||||| ||||||||||||||| ||||||||||||||    
T  23743882 ccatctattttttatttaatggttggtaattattttcatcattttcatataagatagtcattctcata 23743815  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 11434623 - 11434558
Alignment:
Q  12 taatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    ||||| ||||||||||||| ||| || | ||| ||||||||| |||||||||||||| ||||||||    
T  11434623 taatcaaatagttgatgattattctcataattctcatataagatagtcattctcatattatacatc 11434558  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 35751622 - 35751698
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    |||||||||| ||||||||||||  || |||||| || ||||| ||||||||  ||||||||||||||  |||||||    
T  35751622 ccatctatttttaatctaatagtccataatcattctcatcattctcatataaaatagtcattctcataagatacatc 35751698  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42104511 - 42104583
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtata 73  Q
    |||| ||||| | |||||||||||||| |||||| || ||||| ||||||||  |||||||||||| ||||||    
T  42104511 ccatttatttttgatctaatagttgataatcattctcatcattctcatataaagtagtcattctcacagtata 42104583  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42104479 - 42104407
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtata 73  Q
    |||| ||||| | ||||||| |||||| |||||| || ||||| ||||||||  || ||||||||||||||||    
T  42104479 ccatttatttttgatctaatggttgataatcattctcatcattctcatataaagtactcattctcatagtata 42104407  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10143140 - 10143210
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagta 71  Q
    |||||||||| |||||||||||||||| || |||  | |||||   ||||||| |||||||||||||||||    
T  10143140 ccatctatttttaatctaatagttgataattattcccatcattcatatataagatagtcattctcatagta 10143210  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7120890 - 7120959
Alignment:
Q  1 ccatctatttataatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagt 70  Q
    |||||||||| | || | || ||||||||||||| ||  |||||||||||||  ||||||||||||||||    
T  7120890 ccatctatttttgatatgatggttgatgatcattctcaccattttcatataaaatagtcattctcatagt 7120959  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 24252335 - 24252400
Alignment:
Q  12 taatctaatagttgatgatcattttcgtcattttcatataagttagtcattctcatagtatacatc 77  Q
    ||||| ||| |||||| |||||||||  |||| | ||||||| ||||||||||||||||| |||||    
T  24252335 taatcaaatggttgataatcattttcaccattcttatataagatagtcattctcatagtaaacatc 24252400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 40251181 - 40251217
Alignment:
Q  185 ataaaaatcaagttaaaattcttaatagactaacaac 221  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  40251181 ataaaaaccaagttaaaattcctaatagactaacaac 40251217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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