View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_high_10 (Length: 279)
Name: NF19939_high_10
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 38507524 - 38507351
Alignment:
| Q |
1 |
ttattagtctgttacatgtaatttcatgtattttgctcaaaagagtggatgaaattgttgtgacttgtgatattcatcctctcaaaaaaggagaaattgt |
100 |
Q |
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| T |
38507524 |
ttattagtctgttacatgtaatttcatgtattttgctcaaaagagtggatgaaattgttgtgacttgtgatattcatcctctcaaaaaaggagaaattgt |
38507425 |
T |
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| Q |
101 |
tgttgtgataccttggaaatttgaat-aagtcttggaaattcaatggcatataacgttaaaatctttgagagga |
173 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38507424 |
tgttgtgataccttggaaatttgaatcaagtcttggaaattcaatggcatataacgttaaaatctctgagagga |
38507351 |
T |
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