View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19939_high_12 (Length: 255)
Name: NF19939_high_12
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 25747519 - 25747319
Alignment:
| Q |
21 |
tatgattcttctctttttatttcttcatatgcatgcatgcat----tattaattgcattctcatttatataaatattttt-cctttacagggtgatcggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
25747519 |
tatgattcttctctttttatttcttcatatgcatgcatgcatgcattaattattgcattctcatttatataatttttttttcctttacagggtgatcggt |
25747420 |
T |
|
| Q |
116 |
tcattcccaataggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25747419 |
tcattcccaataggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatatt |
25747320 |
T |
|
| Q |
216 |
t |
216 |
Q |
| |
|
| |
|
|
| T |
25747319 |
t |
25747319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 25739115 - 25738914
Alignment:
| Q |
21 |
tatgattcttctctttttatttcttcatatgcatgcatgcat----tattaattgcattctcatttatataaatattttt--cctttacagggtgatcgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
25739115 |
tatgattcttctctttttatttcttcatatgcatgcatgcatgcattaattattgcattctcatttatataattttttttttcctttacagggtgatcgg |
25739016 |
T |
|
| Q |
115 |
ttcattcccaataggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25739015 |
ttcattcccaataggagtttgatggatcttgatcaagccaccagtttgctaactaacaagaccaaaaaatttcacaataaaaatttcaatgtatgtatat |
25738916 |
T |
|
| Q |
215 |
tt |
216 |
Q |
| |
|
|| |
|
|
| T |
25738915 |
tt |
25738914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University