View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19939_high_2 (Length: 659)

Name: NF19939_high_2
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19939_high_2
NF19939_high_2
[»] chr3 (1 HSPs)
chr3 (12-644)||(24602305-24602937)


Alignment Details
Target: chr3 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 12 - 644
Target Start/End: Complemental strand, 24602937 - 24602305
Alignment:
Q  12 cagagaacaaattgacacgaaagtggcagagtggaaagaagaaggaaaggcagagattgtgcctggtgtccttttcattgatgaggtacacatgcttgac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602937 cagagaacaaattgacacgaaagtggcagagtggaaagaagaaggaaaggcagagattgtgcctggtgtccttttcattgatgaggtacacatgcttgac 24602838  T
Q  112 atagagtgcttttcattcctcaatcgggctctggagaatgaaatgtctcccattttagtggtggctaccaacagaggcattacaactattcgaggcacaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24602837 atagagtgcttttcattcctcaatcgggctctggagaatgaaatgtctcccattttagttgtggctaccaacagaggcattacaactattcgaggcacaa 24602738  T
Q  212 attacaagtccccacatgggattcccattgatctacttgatcgcctactcatcatctctactcaaccttacactgaggatgaaattcgcaaaattctgga 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602737 attacaagtccccacatgggattcccattgatcttcttgatcgcctactcatcatctctactcaaccttacactgaggatgaaattcgcaaaattctgga 24602638  T
Q  312 tatcagatgccaagaggaagatgtagacatgagtgaaggtgcaaagcatttgttaaccaaaataggtgtagaaacatctctacgctatgccattcatcta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602637 tatcagatgccaagaggaagatgtagacatgagtgaaggtgcaaagcatttgttaaccaaaataggtgtagaaacatctctacgctatgccattcatcta 24602538  T
Q  412 atcacagcagctgctttggcatgccaaaagagaaagggaaagacagtggaattggatgatattaatcgggtttacaatttgtttttggatgtcaaaagat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602537 atcacagcagctgctttggcatgccaaaagagaaagggaaagacagtggaattggatgatattaatcgggtttacaatttgtttttggatgtcaaaagat 24602438  T
Q  512 cgacacagtacttgatggaatatcaaagtcaatacatgttcagtgaaacaggagaggttgatgaagacgacaccaatgctatggtccagtgaaattcatt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24602437 cgacacagtacttgatggaatatcaaagtcaatacatgttcagtgaaacaggagaggttgatgaagacgacaccaatgctatggtccagtgaaattcatt 24602338  T
Q  612 cacctcagtttgagactttgtaattatctgagt 644  Q
    |||||||||||||||||||||||||||||||||    
T  24602337 cacctcagtttgagactttgtaattatctgagt 24602305  T

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