View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_high_4 (Length: 540)
Name: NF19939_high_4
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 524
Target Start/End: Complemental strand, 2572846 - 2572321
Alignment:
| Q |
9 |
ccaagaatatataatacacatgattgttcataaagaatttatatcaaaaaacactcacatatatagagcattgtataaagttatattgggcctagtgcaa |
108 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2572846 |
ccaaaaatatataatacacatgattgtttgtaaagaatttatatcaaaaaacactcacatatatagagcagtgtataaagttatattgggcctagtgcaa |
2572747 |
T |
|
| Q |
109 |
aattgtagttaaagtttatgccatgtcatatatatata----------cattttgagtcttgccatcagagagagccgagtctcccctccacttcactct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572746 |
aattgtagttaaagtttatgccatgtcatatatatatatatttatatacattttgagtcttgccatcagagagagccgagtctcccctccacttcactct |
2572647 |
T |
|
| Q |
199 |
ttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtacta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572646 |
ttggtccttaggcaactttcctgagcgttgtccttcaaaaaacaagatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtacta |
2572547 |
T |
|
| Q |
299 |
atgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatggttc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572546 |
atgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatggttc |
2572447 |
T |
|
| Q |
399 |
tattaagtttctaagtctgcatgatattcaacgaaactttctggtatttatagtaggaaaaaatatggcagttgcctaactatgcctaactaccattacc |
498 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2572446 |
tattaagtttctaagtctgcatgatattcaactaaactttctggtatttatagtaggaaaaaatatggcagttgcctaactatgcctaactaccattacc |
2572347 |
T |
|
| Q |
499 |
tcaaataggataggaatgtacaaagt |
524 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2572346 |
tcaaataggataggaatgtacaaagt |
2572321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 137 - 395
Target Start/End: Complemental strand, 2562180 - 2561919
Alignment:
| Q |
137 |
tatatatatacattttgagtcttgccatcagagagagccgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaa |
236 |
Q |
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||||||| |||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
2562180 |
tatatatgtacattttgagttttgccatcagagagtgctgaatctcccctccacttcactctttggtctttaggcaatttccctgagcgttgtccttcaa |
2562081 |
T |
|
| Q |
237 |
aaaacatgatggctttgccaagagcatctgcatagtcgtaattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatcc---att |
333 |
Q |
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|||||| ||| ||||||||||||||||||||||||| |||| | | |||||| || ||||||| ||||| |||||| |||| ||||||| || ||| |
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| T |
2562080 |
aaaacaagattgctttgccaagagcatctgcatagttgtaacttgatgaggaacttttactaattaattcctcatccattattgctaatataccattatt |
2561981 |
T |
|
| Q |
334 |
ccaactacccatgacaaataacaagatcaaactattgatcaacaaactgcacctcatgatgg |
395 |
Q |
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| ||||| |||| |||| ||||||| |||| | | |||||||||||||||| |||||||| |
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| T |
2561980 |
cttactactcatggcaaaccacaagattaaaccacttatcaacaaactgcaccccatgatgg |
2561919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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