View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_1 (Length: 882)
Name: NF19939_low_1
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 151 - 666
Target Start/End: Original strand, 43016495 - 43017012
Alignment:
| Q |
151 |
ttgatgacaattcttaccatgtttcaacaatcatgctccaacaaaatgaaaattttcaggtatgtattattcatcatccattccaatttagtcttcttaa |
250 |
Q |
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| T |
43016495 |
ttgatgacaattcttaccatgtttcaacaatcatgctccaacaaaatgaaaattttcaggtatgtattattcatcatccattccaatttagtcttcttaa |
43016594 |
T |
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| Q |
251 |
atattcttcttgtagttgtttctctttaattttctttatgtaaacaattgagacataattcaaatcgcgattgcatcgctactaaaaaa--ctatagcgt |
348 |
Q |
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| T |
43016595 |
atattcttcttgtagttgtttctctttaattttctttatgtaaacaattgagacataattcaagtcgcgattgcatcgctgcgaaaaaaaactatagcg- |
43016693 |
T |
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| Q |
349 |
gggnnnnnnnnttagtctatagtatttttatgaatcacaataatttgactcacggttatactttttgaggaagaaatcagtaattttcaattttgtcttg |
448 |
Q |
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| T |
43016694 |
ggggcaaaaaattagtctatagtatttttatgaatcataataatttgactcacggttaaactttttgaggaagaaatcgataattttcaattttgtcttg |
43016793 |
T |
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| Q |
449 |
gcgnnnnnnn-aataattttcaattagtctttatgtaaacaattgaaaattactgatttctttctcaaaaagtttaaccgcgagtcaaattattaaagtt |
547 |
Q |
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| T |
43016794 |
gcgttttttttaataattttcaattagtctttaaataaacaattgaaaattactgatttctttctcaaaaagtttaaccgtgagtcaaattattaaagtt |
43016893 |
T |
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| Q |
548 |
ttattagtactaaaatatctcaaaaaatgattaatataagcaacttttttagatttttaaaagagaatgtggtaacacctatttatttatcgtggcaaaa |
647 |
Q |
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| T |
43016894 |
ttattagtactaaaatatctcaaaaaatgattaatataagcaacttttttagatttttaaaagagaatgtggtaacacctatttatttatcgtggcaaaa |
43016993 |
T |
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| Q |
648 |
taaaagttcagttgatgtc |
666 |
Q |
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| T |
43016994 |
taaaagtttagttgatgtc |
43017012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 43016356 - 43016433
Alignment:
| Q |
12 |
cagcaacagcaacagcaacatgatcatcatgtgcaccaacagattagtgcaaacgcagctttccatataagtaggcct |
89 |
Q |
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| T |
43016356 |
cagcaacagcaacagcaacatgatcatcatgtgcaccaacagattagtgcaaacgcagctttccatataagtaggcct |
43016433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 737 - 807
Target Start/End: Original strand, 43017057 - 43017127
Alignment:
| Q |
737 |
tgacattgtggttgtagaatcctcaatatacttgatgtgagacctgaatcgttgtgatagatccttaaaaa |
807 |
Q |
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| T |
43017057 |
tgacattgtggttgtagaatcatcaatatacttgatgtgagacctgaatcgttgtgatagatccttaaaaa |
43017127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 43016887 - 43016834
Alignment:
| Q |
387 |
aataatttgactcacggttatactttttgaggaagaaatcagtaattttcaatt |
440 |
Q |
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| T |
43016887 |
aataatttgactcacggttaaactttttgagaaagaaatcagtaattttcaatt |
43016834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 488 - 542
Target Start/End: Complemental strand, 43016785 - 43016731
Alignment:
| Q |
488 |
aattgaaaattactgatttctttctcaaaaagtttaaccgcgagtcaaattatta |
542 |
Q |
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| T |
43016785 |
aattgaaaattatcgatttcttcctcaaaaagtttaaccgtgagtcaaattatta |
43016731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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