View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_10 (Length: 310)
Name: NF19939_low_10
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 45 - 290
Target Start/End: Complemental strand, 2312665 - 2312420
Alignment:
| Q |
45 |
acaaggttggtcattattaaaccgtggtttcatacttataatatggataaaaaatcatgagtttaatggttacgcatcaacgatggcaaatagattcact |
144 |
Q |
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| T |
2312665 |
acaaggttggtcattattaaaccgtggtttcatacttataatatggataaaaaatcatgagtttaatggtttcgcatcaacgatggcaaatagattcact |
2312566 |
T |
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| Q |
145 |
cgtctaatgaaaatctattatctagtttccaaaggttttccattcattcatgcataaaaatcacaacattttcttcttcagactatattaagttttgttt |
244 |
Q |
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| T |
2312565 |
cgtctaatgaaaatctattatctagtttccaaaggttttccattcattcatgcataaaaatcacaacattttcttcttcagactaaattaagttttgttt |
2312466 |
T |
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| Q |
245 |
gcgtctctgcaaaaccgtaggcactaactcatccattgcttgtctt |
290 |
Q |
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| T |
2312465 |
gcttctctgcaaaaccgtaggcactaattcatccattgcttgtctt |
2312420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 3315595 - 3315666
Alignment:
| Q |
168 |
agtttccaaaggttttccattcattcatgcataaaaatcacaacattttcttcttcagactatattaagttt |
239 |
Q |
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| T |
3315595 |
agttcccaaaggttttccattcattcatgcataaaaatcacaacattgcctccttcaaactaaattaagttt |
3315666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 2925526 - 2925574
Alignment:
| Q |
166 |
ctagtttccaaaggttttccattcattcatgcataaaaatcacaacatt |
214 |
Q |
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| T |
2925526 |
ctagttcccaaaggttttccattcattcatgcataaaaatcacaacatt |
2925574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 3315682 - 3315728
Alignment:
| Q |
256 |
aaaccgtaggcactaactcatccattgcttgtcttctttattttctt |
302 |
Q |
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| T |
3315682 |
aaaccgtaggcactaactcatccattgcttgtctgctgtatattctt |
3315728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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