View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_15 (Length: 250)
Name: NF19939_low_15
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_15 |
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| [»] scaffold1298 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 7010692 - 7010468
Alignment:
| Q |
10 |
attattctaatcctttattttagttgggttacaaataggataacataaacacgcgcttaccctcttcgattcccttgactcccactctttgtgatttaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010692 |
attattctaatcctttattttagttgggttacaaataggatagcataaacacgtgcttaccctcttcgattcccttgactcccactctttgtgatttaat |
7010593 |
T |
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| Q |
110 |
cccacttctctccatattctctgctgcaagttgcagtggtgttgctctctgcataatattgatatcgtgtcctttatgtgtgttttttattaataaattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7010592 |
cccacttctctccatattctctgctgcaagttgcagtggtgttgctttctgcataatattgatatcgtgtcctttatgtgtgttttttattaataaattt |
7010493 |
T |
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| Q |
210 |
gcatttgcttcctaatgaaaatgtt |
234 |
Q |
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|||||||||||| |||||||||||| |
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| T |
7010492 |
gcatttgcttccgaatgaaaatgtt |
7010468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1298 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1298
Description:
Target: scaffold1298; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 1996 - 2130
Alignment:
| Q |
10 |
attattctaatcctttattttagttgggttacaaataggataacataaacacgcgcttaccctcttcgattcccttgactcccactctttgtgatttaat |
109 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
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| T |
1996 |
attattctaatcatttgttttagttgggttacaaataggatagcataaacacgcgcttaccctcttcgattcccatgactccca--ctttgtaatttaat |
2093 |
T |
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| Q |
110 |
cccacttctctccatattctctgctgcaagttgcagt |
146 |
Q |
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| T |
2094 |
cccacttttctccatattttctgctgcgagtagcagt |
2130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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