View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19939_low_16 (Length: 246)

Name: NF19939_low_16
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19939_low_16
NF19939_low_16
[»] chr2 (3 HSPs)
chr2 (133-230)||(25747680-25747777)
chr2 (17-79)||(25747555-25747617)
chr2 (17-79)||(25739151-25739213)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 25747680 - 25747777
Alignment:
Q  133 gaatgagtttgggaacgttgtttggtttgtttacccgccaactacatataaagtggcaacggtttgtgttttgaaccgttactatattttgcactcgt 230  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25747680 gaatgggtttgagaacgttgtttggtttgtttacccgccaactacatataaagtggcaacggtttgtgttttgaaccgttactatattttgcactcgt 25747777  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 25747555 - 25747617
Alignment:
Q  17 gggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacattttgg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25747555 gggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacattttgg 25747617  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 25739151 - 25739213
Alignment:
Q  17 gggtgggagggctgagaaggtgttttggagagtaccaatcacgatcaagattccacattttgg 79  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25739151 gggtgggagggatgaggaggtgttttggagagtaccaatcacgatcaagattccacattttgg 25739213  T

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