View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_17 (Length: 246)
Name: NF19939_low_17
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 4571958 - 4572173
Alignment:
| Q |
14 |
atatgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4571958 |
atatgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagaaatgtac |
4572057 |
T |
|
| Q |
114 |
gtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4572058 |
gtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgct |
4572157 |
T |
|
| Q |
214 |
aatatctgaaactatg |
229 |
Q |
| |
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|||||| ||||||||| |
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| T |
4572158 |
aatatcagaaactatg |
4572173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 4558127 - 4558332
Alignment:
| Q |
24 |
tgaacactttaactactctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtacgtaaatgaat |
123 |
Q |
| |
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||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
4558127 |
tgaacactttaactattctacatatatgaagaaagcaagaagattaattgttaccttttagtggtatgagacctttatccaacaatgtactaaaatgaat |
4558226 |
T |
|
| Q |
124 |
accagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgctaatatctgaa |
223 |
Q |
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| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| ||||| ||||||| |||||| ||| |
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| T |
4558227 |
aaaagtcaaaaatgtacatgcattggatggactaaagaaaacagaagggattgaaagttcttcagaagcttgtatggtaaaagacatgccaatatcagaa |
4558326 |
T |
|
| Q |
224 |
actatg |
229 |
Q |
| |
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|||||| |
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| T |
4558327 |
actatg |
4558332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 4586624 - 4586838
Alignment:
| Q |
14 |
atatgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtac |
113 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
4586624 |
atatgtcatatgaacacgctaactattctacatatatgaagaaagaaagaagattaattgttaccctttagtggtatgagacctttatccaacaatgtac |
4586723 |
T |
|
| Q |
114 |
gtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgct |
213 |
Q |
| |
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|||||||||| ||||| ||| |||||||| ||| |||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
4586724 |
taaaatgaatacaagtcaaaaacatacatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtatagtaaaggacatggt |
4586823 |
T |
|
| Q |
214 |
aatatctgaaactat |
228 |
Q |
| |
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|||||| |||||||| |
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| T |
4586824 |
aatatcagaaactat |
4586838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 4612862 - 4612655
Alignment:
| Q |
16 |
atgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattg----ttaccttttagtggtatgagacctttatctagcaatgt |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||| | |||||| |
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| T |
4612862 |
atgtcatatgaacactttaactacactacacctatgaagaaagaaagaagattaaatgatcgttaccttttagtggtatgacacctttatcaaacaatgt |
4612763 |
T |
|
| Q |
112 |
acgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatg |
211 |
Q |
| |
|
| |||| |||| ||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
4612762 |
aagtaagtgaaaaccagtccaaaatgtacatgcattggctggactaaagaaaacaacagggattgaaagttcttcaccagcttgtatggtaaaagacatg |
4612663 |
T |
|
| Q |
212 |
ctaatatc |
219 |
Q |
| |
|
||| |||| |
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|
| T |
4612662 |
ctattatc |
4612655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 4581004 - 4581221
Alignment:
| Q |
16 |
atgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattg----ttaccttttagtggtatgagacctttatctagcaatgt |
111 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||| || | || ||| |
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| T |
4581004 |
atgtcatattaatactttaactacactacatctatgaagaaagaaagaagattaattgattgttaccttttagtggtatgacacctttgtcaaacagtgt |
4581103 |
T |
|
| Q |
112 |
acgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatg |
211 |
Q |
| |
|
| |||| |||| || ||||| ||| |||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
4581104 |
aggtaagtgaaaacaagtcaaaaacatacatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatg |
4581203 |
T |
|
| Q |
212 |
ctaatatctgaaactatg |
229 |
Q |
| |
|
||| |||| ||||||||| |
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|
| T |
4581204 |
ctattatcagaaactatg |
4581221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 4599155 - 4599353
Alignment:
| Q |
19 |
tcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattg------ttaccttttagtggtatgagacctttatctagcaatgta |
112 |
Q |
| |
|
||||||||||| |||||||| |||||| || | ||||||||| |||||||||| |||||||||||||||||||||| ||| || | |||||| |
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|
| T |
4599155 |
tcatatgaacaatttaactaaactacacctaagcagaaagaaataagattaattagttatattaccttttagtggtatgagacatttttcaaacaatgtc |
4599254 |
T |
|
| Q |
113 |
cgtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatg |
211 |
Q |
| |
|
|||| || | || ||||| |||||||||||||||||||||||||||| |||| |||| | |||||||||||||||| |||||||||||||||||||| |
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|
| T |
4599255 |
ggtaagtgtaaacaagtcaagaatgtacatgcattggatggactaaagagaacaataggaagtgaaagttcttcagcaacttgtatagtaaaggacatg |
4599353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 16685430 - 16685215
Alignment:
| Q |
14 |
atatgtcatatgaacactttaactactctacacatatgaagaaagaaagaagattaattgttaccttttagtggtatgagacctttatctagcaatgtac |
113 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |||||||| |
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|
| T |
16685430 |
atatgtcatatgaacactctaactattctacatatatgaagaaagaaagaagattcattgttaccatttagtggtatgagacctttatccaacaatgtac |
16685331 |
T |
|
| Q |
114 |
gtaaatgaataccagtcagaaatgtacatgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgct |
213 |
Q |
| |
|
||||||||| ||| | ||||||||||||||| |||||| |||||| |||| ||||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16685330 |
taaaatgaataaaagttaaaaatgtacatgcattcgatggattaaagagaacaacagggagtgaaagttcttcagcagcttgtatagtaaaagacatgct |
16685231 |
T |
|
| Q |
214 |
aatatctgaaactatg |
229 |
Q |
| |
|
|||||| ||||||||| |
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|
| T |
16685230 |
aatatcagaaactatg |
16685215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 1282560 - 1282625
Alignment:
| Q |
140 |
catgcattggatggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaag |
205 |
Q |
| |
|
|||||| | |||||| ||||| ||||||||||| || || ||||||||||||||||||||||||| |
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|
| T |
1282560 |
catgcacttgatggaaaaaagagaacattagggagtgcaaattcttcagcagcttgtatagtaaag |
1282625 |
T |
|
Back To:
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