View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_18 (Length: 237)
Name: NF19939_low_18
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26661145 - 26661368
Alignment:
| Q |
1 |
ttgtcaaaatatcattttctattgcaaagggattataatgaattgaagttaagaataacttgatattctttctttttcctatgatataaggaatgtgatt |
100 |
Q |
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| T |
26661145 |
ttgtcaaaatatcattttctattgcaaagggattataatgaattgaagttaagaataacttgatattctttctttttcctatgatataaggaatgtgatt |
26661244 |
T |
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| Q |
101 |
ctatcaacaaagaatctgttctcgaggaggcatgcccatgctatagcaaatagttaaggaaactgcataaactatcataatgcagctaactaaagtatag |
200 |
Q |
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| T |
26661245 |
ctatcaacaaagaatctgttctcgaggaggcatgcccatgctatagcaaatagttcaggaaactgcataaactatcataatgcagctaactaaagtatag |
26661344 |
T |
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| Q |
201 |
aactcagcattcgatgtcacaaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
26661345 |
aactcagcattcgatgtcacaaat |
26661368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 26656200 - 26656349
Alignment:
| Q |
1 |
ttgtcaaaatatcattttctattgcaaagggattataatgaattgaagttaagaataacttgatattctttctttttcctatgatataaggaatgtgatt |
100 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |
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| T |
26656200 |
ttgtcaaaatatcatttcctattacaaagggattataatgaatt-----taagaataacttgatattc---------------atattaagaatgtgatt |
26656279 |
T |
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| Q |
101 |
ctatcaacaaagaatctgttctcgaggaggcatgcccatgctatagcaaatagttaaggaaactgcataaa |
171 |
Q |
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| T |
26656280 |
ctctcaacaaagaacctgttctcaaagaggcatgcc-atgctatagcaaatagttaaggaaactgcataaa |
26656349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 26640099 - 26640190
Alignment:
| Q |
57 |
aacttgatattctttctttttcctatgatata-aggaatgtgattctatcaacaaagaatctgttctcgaggaggcatgcccatgctatagca |
148 |
Q |
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| T |
26640099 |
aacttgatgtcctttctttttcttatgatattcagggatgtgattctttcaacaaagaatacgttctcgaggaggcatg-ccatgctatagca |
26640190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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