View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_3 (Length: 556)
Name: NF19939_low_3
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 549
Target Start/End: Complemental strand, 42158986 - 42158449
Alignment:
| Q |
18 |
cttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctctttatctttagat |
117 |
Q |
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| T |
42158986 |
cttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctctttatctttagat |
42158887 |
T |
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| Q |
118 |
ttggattttatatcgaacaaccaactagtggttggacggaccatatatactttggttcgtcaaaccacatagatttcttagaaattagtggtctgactta |
217 |
Q |
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| T |
42158886 |
ttggattttatatcaaacaaccaactagtggttgaacggaccatatatactgtggttcgtcaaaccacatagatttcttagaaattagtggtctgactta |
42158787 |
T |
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| Q |
218 |
ctgcgacaggtggtttgtcaaaccatggttggttgttgctcaatgtccaacggctaattactgtttggatggacaaaccaaaagagagaatccacgttga |
317 |
Q |
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| T |
42158786 |
ctacgataggtggtttgtcaaaccatggttggttgttggtcaatgtccaacggctaattactgtttggatggacaaaccaaaagagagaatccacgttga |
42158687 |
T |
|
| Q |
318 |
taatctattatcatagcaacatcattcatgaatcatgataatcattgcttgaaaaagttgaaataacatataaacttagagacag------aaaagnnnn |
411 |
Q |
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| T |
42158686 |
taatctattatcatagcaacatcattcatgaatcatgataatcattgcttgaaaaagttgaaataacatataaacttagagacagaaaaaaaaaaaaaaa |
42158587 |
T |
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| Q |
412 |
nnnnnnnnnnngacaaatgtacctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaannnnnnncagtttctaatatctgtt |
511 |
Q |
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| T |
42158586 |
aaaaaaaaaaagacaaatgtatctctaattttgttgttaagtgttagagatgccaaatttcgtgaccaatttaaatttttttccgtttctaatatctgtt |
42158487 |
T |
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| Q |
512 |
gttatatcaacnnnnnnnagtagtgatgatgatgatgt |
549 |
Q |
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| T |
42158486 |
gttatatcaactttttttagtagtgatgatgatgatgt |
42158449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 42146691 - 42146585
Alignment:
| Q |
18 |
cttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttgtctctttatctttagat |
117 |
Q |
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|||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
42146691 |
cttgttggatagcatccttaagattgtcgaagaagacaatgagaagtttctcagaaaacttagagaccgacaagacaggtttgtctctttatctttatat |
42146592 |
T |
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| Q |
118 |
ttggatt |
124 |
Q |
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| T |
42146591 |
tttgatt |
42146585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 42179960 - 42179878
Alignment:
| Q |
18 |
cttgttggatagtatcctcaagattgttgaagaagacaatgagaagtttcttaggaaacttagagacagacaagacaggtttg |
100 |
Q |
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| T |
42179960 |
cttgttggatagcatccttaagattgttgaagaagacaatgagaagtttctaagaaaacttagagacagacaagacaggtttg |
42179878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 11373420 - 11373372
Alignment:
| Q |
435 |
tctaattttgttgttaagtgttagagatgccaaatttcgtgaccaattt |
483 |
Q |
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|||| |||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
11373420 |
tctatttttgttgctaagtgttagaaatgccaaatttgatgaccaattt |
11373372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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