View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_5 (Length: 489)
Name: NF19939_low_5
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 293820 - 293367
Alignment:
| Q |
19 |
taacatacactaattggagagttatccatatcacagggagatcgtactcttgccgattatatgaaagagcgcaacttcccttcaaacttagaatctgtca |
118 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293820 |
taacatgcactaattggagagttatccatatcacagggagatcgtactcttgcagattatatgaaagagcgcaacttcccttcaaacttagaatctgtca |
293721 |
T |
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| Q |
119 |
tgtttggacgtgtgttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293720 |
tgtttggacgtgtgttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattca |
293621 |
T |
|
| Q |
219 |
tgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagacctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293620 |
tgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagacctt |
293521 |
T |
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| Q |
319 |
cggatcggaaagaattatgttcccgaccgcacccttttggatcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
293520 |
cggatcggaaagaattatgttcccgaccgcacccttttggatcctgactattgccccccagaactctatgtactcccagaagaaacaccaagtcccccac |
293421 |
T |
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| Q |
419 |
cggcgccaattgctgcgttcttttcaccaatcctatggcaggtttattttatat |
472 |
Q |
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| T |
293420 |
cggcgccaattgctgcgttcttttcaccaatcctatggcaggtttattttatat |
293367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 27 - 338
Target Start/End: Original strand, 27492235 - 27492546
Alignment:
| Q |
27 |
actaattggagagttatccatatcacagggagatcgtactcttgccgattatatgaaagagcgcaacttcccttcaaacttagaatctgtcatgtttgga |
126 |
Q |
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|||||||| || ||| ||||||||||||||||| || |||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||||| || |
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| T |
27492235 |
actaattgcagggttgtccatatcacagggagaccgcactcttgctgattatatgacagataaaaacttcccttcgaacttagaatctgtcatgtttcga |
27492334 |
T |
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| Q |
127 |
cgtgtgttgcaaggcgtagattcttctagacgaaatgcattgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacag |
226 |
Q |
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| T |
27492335 |
aatgcgttgcaaggtatagactcttcaaaaagaaatgcattgatcatcaagcaaataatgcgccaaatcattacatctcttaagaaaattcacgacactg |
27492434 |
T |
|
| Q |
227 |
gcattgttcatagagatataaagccagccaacttagtggtcaccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggatcgg |
326 |
Q |
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|||| ||||| || ||| ||||||| ||||||| || || || ||| | ||||||||||||||||||||||||||||| |||||||||||| | || || |
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| T |
27492435 |
gcatcgttcacagggatgtaaagccttccaacttggttgttacaaaaaaagggcagattaaactcattgattttggtgcagcaacagaccttagaattgg |
27492534 |
T |
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| Q |
327 |
aaagaattatgt |
338 |
Q |
| |
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|||||||||||| |
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| T |
27492535 |
aaagaattatgt |
27492546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 27495080 - 27495236
Alignment:
| Q |
167 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
266 |
Q |
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|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
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| T |
27495080 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27495179 |
T |
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| Q |
267 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
323 |
Q |
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|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
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| T |
27495180 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27495236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 27501738 - 27501894
Alignment:
| Q |
167 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
266 |
Q |
| |
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|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
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| T |
27501738 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27501837 |
T |
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| Q |
267 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
323 |
Q |
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|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
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| T |
27501838 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27501894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 27516530 - 27516686
Alignment:
| Q |
167 |
tgatcatcaagcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggt |
266 |
Q |
| |
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|||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || |
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| T |
27516530 |
tgatcatcaagcaaataatgcgccaaatagttacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgt |
27516629 |
T |
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| Q |
267 |
caccaaacaggggcagattaaactcattgattttggtgctgcaacagaccttcggat |
323 |
Q |
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|| ||||| || | ||| ||| || ||||||||||||| |||||||| ||| |||| |
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| T |
27516630 |
tacaaaacaaggtcggatcaaattcgttgattttggtgcagcaacagatcttaggat |
27516686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 177 - 323
Target Start/End: Original strand, 27507565 - 27507711
Alignment:
| Q |
177 |
gcaaatcatgcgccagataattacttctcttaagaaaattcatgatacaggcattgttcatagagatataaagccagccaacttagtggtcaccaaacag |
276 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| || |||| |||||| || ||||||||||| | ||||| || || || |||| |
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| T |
27507565 |
gcaaataatgcgccagataattacatctcttaagaaaattcatgacactggcactgttcacagggatataaagccttcaaacttggttgttacaaaacta |
27507664 |
T |
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| Q |
277 |
gggcagattaaactcattgattttggtgctgcaacagaccttcggat |
323 |
Q |
| |
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|| | ||||||| || ||||||||||||| |||||||| ||| |||| |
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| T |
27507665 |
ggtcggattaaattcgttgattttggtgcagcaacagatcttaggat |
27507711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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