View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_6 (Length: 395)
Name: NF19939_low_6
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 18350506 - 18350757
Alignment:
| Q |
10 |
attattctaggagatttgtttttgtccttttaaatttgttcnnnnnnntttgtttgtgagaaaaattaattagttcaacaannnnnnnnattc-ttttaa |
108 |
Q |
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| T |
18350506 |
attattttaggagaatt-tttttgtccatttaaatttgttcaaaaaaatttgtttgtgagaaaaattaattagttcaacaatttttttttgtccttttaa |
18350604 |
T |
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| Q |
109 |
ttttgaagcgtctcaagaaccattgtgaatacaactatttttgttatctatcagattaactttgtaacctcaataattataatttaaatattttccgaga |
208 |
Q |
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| T |
18350605 |
ttttgaagcgtctcaagaaccattgtgaatacaactatttttgttatctattagattaaatttgtaacctcaataattataatttaaatatcttccgaga |
18350704 |
T |
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| Q |
209 |
aaactgtaaaaagattgtagtgtcactgtaataatgattgctcactctcccaa |
261 |
Q |
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| T |
18350705 |
aaattgtaaaatgattgtagtgtcactttaataatgattgctcactctcccaa |
18350757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 18350780 - 18350813
Alignment:
| Q |
283 |
aaaatagaactagttttcttgcaagaatgaagtc |
316 |
Q |
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| T |
18350780 |
aaaatagaactatttttcttgcaagaatgaagtc |
18350813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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