View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_7 (Length: 387)
Name: NF19939_low_7
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 371
Target Start/End: Complemental strand, 3829882 - 3829521
Alignment:
| Q |
8 |
agaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactatactctccattgctannnnnnnnaaccaatataatag |
107 |
Q |
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| T |
3829882 |
agaaaatctcaatttgaaaaatattcattttgacgagtcaagcaggtactcagatgcacactatactctccattgctattttttttaaccaata--atag |
3829785 |
T |
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| Q |
108 |
gatatttttatatagtgatgccacttttgtgttgactccacataaccaattaatatnnnnnnnnnnttaaaa-gacaaacaaatgaagaatgtctattaa |
206 |
Q |
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| T |
3829784 |
gatatttttatatagtgatgccacttttgtgttgactccgcataaccaattaatataaaaaaaaaaaaaaaaagacaaacaaatgaagaatgtctattaa |
3829685 |
T |
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| Q |
207 |
aacaagtgaaagatgatcattttgtttcaattaacaatttgtttgaattattacaaatagacatggctaataaaactaggtcaaataaaactatcaaaac |
306 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3829684 |
aacaagtgaaagatgat-attttgtttcaattaacaatttgtttgaattattacaaatagacatggctaataaaattaggtcaaataaaactatcaaaac |
3829586 |
T |
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| Q |
307 |
tgttgaattgggtgaaataatatgtagtcattaatttcatttaggcaaatttttctgacactatt |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829585 |
tgttgaattgggtgaaataatatgtagtcattaatttcatttaggcaaatttttctgacactatt |
3829521 |
T |
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