View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19939_low_8 (Length: 358)
Name: NF19939_low_8
Description: NF19939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19939_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 49995198 - 49995347
Alignment:
| Q |
1 |
aaaacacaagatgttgcttattttaactgtaatgaccagggatctcttctcatgatcaattaatttatccacaattaaactaaacaatcacttctctcgt |
100 |
Q |
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| T |
49995198 |
aaaacacaagatgttgcttatttcaactgtaatgaccagggatctcttctcatgatcaattaatttatccacaattaaactaaacaatcacttctctcgt |
49995297 |
T |
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| Q |
101 |
tgacgtataatttgtcaaatctatcacaaagcgcacca-ccaccttgtgatgac |
153 |
Q |
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| T |
49995298 |
tgacgt---atttgtcaaatctatcac-aagcgcaccacccaccttgtgatgac |
49995347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 49995422 - 49995546
Alignment:
| Q |
228 |
tgtgcatagtatttcaggattgtattaaaattacagctcaaacaaggtctatatgtattaaaaactatggctacagcccaaaggcatgaactacnnnnnn |
327 |
Q |
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| T |
49995422 |
tgtgcatagtatttcaggattgtattaaaattacagctcaaacaaggtc--tatgtattaaaaactatggctacagcccaaaggcatgaactacaaaaaa |
49995519 |
T |
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| Q |
328 |
ngagggaaagaaactggaaacctttga |
354 |
Q |
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| T |
49995520 |
agagggaaagaaactggaaacctttga |
49995546 |
T |
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