View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1993_high_2 (Length: 308)
Name: NF1993_high_2
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 2 - 292
Target Start/End: Original strand, 30414306 - 30414596
Alignment:
| Q |
2 |
gtgaagaatcaaagggttgtgagtttctacttcccnnnnnnnnntgatttgttgtccatgaagttttaaacatttccaaggaccaatgcacaatgaacca |
101 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414306 |
gtgaagaatcaaagggttgtgagtttctacttccaaaaaaaaaatgatttgttgtcgatgaagttttaaacatttccaaggaccaatgcacaatgaacca |
30414405 |
T |
|
| Q |
102 |
actatcaatgtcgtgcgatgtacaccttgctttagtacaaagctactagaccaaatataatttaaccaaggtcacgagtatttgatgtgaaaatccttgg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30414406 |
actatcaatgtcgtgcgatgtacaccttgctttagtacaaagctactagaccaaatataatttaaccaaggtcacgagtatttgatgtgaaaatccttgg |
30414505 |
T |
|
| Q |
202 |
tgattgttattattcctcttgcgatttggcgccatgtgttacaagggcgctatagttgtttgagtaaccatgtccaatataggcaggaatg |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30414506 |
tgattgttattattcctcttgcgatttggcgccatgtgttacaaggatgctatagttgtttgagtaaccatgtccaatataggctggaatg |
30414596 |
T |
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