View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1993_low_1 (Length: 608)
Name: NF1993_low_1
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 31797439 - 31797184
Alignment:
| Q |
1 |
tgcattattgctcatacaaggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaattctagaggattctgcatcttctaccatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31797439 |
tgcattattgctcatacaaggccaaaactaggtagataatcatcaagagtaatgactactaactcgtaaaagtctagaggattctgcatcttctaccatg |
31797340 |
T |
|
| Q |
101 |
gatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaagagacggtgaacccaaagataactcggcat |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31797339 |
gatacatgattagcatgctcagaatatttcaaaggagttgtcaaaactacttgtacgtcttatgtaaaaagagacggtgaacccaaacataactcggcat |
31797240 |
T |
|
| Q |
201 |
acactttgatactcccccgtttcaggattgaaacatgccatgacaaatgaccaatt |
256 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31797239 |
acaccttgatactcccccgtttcaggattgaaacgtgccatgacaaatgaccaatt |
31797184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 253 - 443
Target Start/End: Complemental strand, 31797155 - 31796965
Alignment:
| Q |
253 |
aatttgtgaccagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaac |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797155 |
aatttgtgaccagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaac |
31797056 |
T |
|
| Q |
353 |
gcattatcaactgctcaacacgaataatctgactgttaaatattactnnnnnnnnttagcaatgcctatattcatctgctttcctttaact |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797055 |
gcattatcaactgctcaacacgaataatctgactgttaaatattactaaaaaaaattagcaatgcctatattcatctgctttcctttaact |
31796965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 443 - 592
Target Start/End: Complemental strand, 31796912 - 31796764
Alignment:
| Q |
443 |
ttgggaatgacgattttacgaatggaggttagttccaaagaggagagagaatctgcatgaagctctgagtgagtgtgagagcgttgttgaataaccactc |
542 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31796912 |
ttgggagtgacgatttta-gaatggaggttagttccaaagaggacagagaatctgcatgaagctctgagtgagtgtgagagcgttgttgaataaccactc |
31796814 |
T |
|
| Q |
543 |
catatgaatcgttgattcgtcttccttcgtcatcttcttctatgttctct |
592 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31796813 |
catatggattgttgattcgtcttccttcgtcatcttcttctatgttctct |
31796764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 82 - 249
Target Start/End: Complemental strand, 31791214 - 31791048
Alignment:
| Q |
82 |
ttctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtatgtcttatgtaaaaagagacggtgaa |
181 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||| |
|
|
| T |
31791214 |
ttctgcatcttctaccatagatgcatgattagcatgcccagaatatttcaaaggatatgtcaaaactacttgtacctc-aatgtaaaaagagtctgtgaa |
31791116 |
T |
|
| Q |
182 |
cccaaagataactcggcatacactttgatactcccccgtttcaggattgaaacatgccatgacaaatg |
249 |
Q |
| |
|
|||| | || |||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
31791115 |
cccagacattactcggcacacactttgatactcttcagtttcaggattgaaacatgccatgagaaatg |
31791048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 261 - 382
Target Start/End: Complemental strand, 31789883 - 31789762
Alignment:
| Q |
261 |
accagatgcatacactttcgtcttaggcagaaaggaaaacccagtaacttgtaaacagtacttcaatggatcagcaagactgtatttgaaacgcattatc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |||| |
|
|
| T |
31789883 |
accagatgcatacactttcgtcttaggcggagagggaaacccagtaacctgcaaacagtacttcaatggatcagcaagactgtatatgaaacacaatatc |
31789784 |
T |
|
| Q |
361 |
aactgctcaacacgaataatct |
382 |
Q |
| |
|
||||||| || || |||||||| |
|
|
| T |
31789783 |
aactgctaaaaacaaataatct |
31789762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 31799879 - 31799810
Alignment:
| Q |
83 |
tctgcatcttctaccatggatacatgattagcatgcccagaatatttcaaaggatatgtcaaaactactt |
152 |
Q |
| |
|
||||||||||||| || ||||||| |||| |||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
31799879 |
tctgcatcttctaacacagatacataattaacatgcccatagtattttaaaggatatgtcaaaactactt |
31799810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31786042 - 31786007
Alignment:
| Q |
1 |
tgcattattgctcatacaaggccaaaactaggtaga |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31786042 |
tgcattattgctcatacaaggccaaaactaggtaga |
31786007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 289
Target Start/End: Complemental strand, 31804302 - 31804266
Alignment:
| Q |
253 |
aatttgtgaccagatgcatacactttcgtcttaggca |
289 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
31804302 |
aattggtgaccagatgcatacactttcttcttaggca |
31804266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University