View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1993_low_3 (Length: 434)

Name: NF1993_low_3
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1993_low_3
NF1993_low_3
[»] chr4 (7 HSPs)
chr4 (13-420)||(36984174-36984583)
chr4 (235-364)||(36979769-36979898)
chr4 (235-301)||(36978913-36978979)
chr4 (291-364)||(36995730-36995803)
chr4 (243-310)||(37000387-37000454)
chr4 (263-385)||(36986218-36986340)
chr4 (157-240)||(36978817-36978900)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 36984174 - 36984583
Alignment:
Q  13 atgaaaatggaactcttagtggggatgatgttggtccaccgaaaggtgttggtccactgagagcttgtggagaaggtgtgggtcctatgaaatggagctt 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36984174 atgaaaatggaactcttattggggatgatgttggtccaccgaaaggtgttggtccactgagagcttgtggagaaggtgtgggtcctatgaaatggagctt 36984273  T
Q  113 ttgcatccttactggtcccttcaacctgttgttaacaataccacctccattctcaacatcagaatttaacctattgctaaaattcttctgtttcacctcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  36984274 ttgcatccttactggtcccttcaacctgttgttaacaataccacctccattctcaacatcagaatttaacttattgctaaaattctcctgtttcacctcc 36984373  T
Q  213 tctttggccttgtagatttttagcttctttgctttcaaagctgcttcacaagcagctttgtgtttcctcccattaagatgggaattcaatgttttctcac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  36984374 tctttggccttgtagatttttagcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaatgttttttcac 36984473  T
Q  313 atggaactgttaccaaacataaagaacatgcccactctttctgcacttccttttgcgcaatagtagaactc--tggaacctctacactaactgtgtcact 410  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  36984474 atggaactgttaccaaacataaagcacatgcccactctttctgcacttccttttgcgcaatagtagaactctgtggaacctctacaccaactgtgtcact 36984573  T
Q  411 ctgctgttcc 420  Q
    ||||||||||    
T  36984574 ctgctgttcc 36984583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 36979769 - 36979898
Alignment:
Q  235 gcttctttgctttcaaagctgcttcacaagcagctttgtgtttcctcccattaagatgggaattcaatgttttctcacatggaactgttaccaaacataa 334  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||| |||  |  | |  |||||||||||||||    
T  36979769 gcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatctggctcgaagttgttaccaaacataa 36979868  T
Q  335 agaacatgcccactctttctgcacttcctt 364  Q
    || ||| | |||||||||| ||||||||||    
T  36979869 agcacaagtccactctttcggcacttcctt 36979898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 36978913 - 36978979
Alignment:
Q  235 gcttctttgctttcaaagctgcttcacaagcagctttgtgtttcctcccattaagatgggaattcaa 301  Q
    ||||||||||||||||||| |||||||||  |||  |||||||||||||||||||||||||||||||    
T  36978913 gcttctttgctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaa 36978979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 36995730 - 36995803
Alignment:
Q  291 tgggaattcaatgttttctcacatggaactgttaccaaacataaagaacatgcccactctttctgcacttcctt 364  Q
    |||||| |||| ||||||||||| | ||| |||||||||||||||| ||| | |||||||||||||||| ||||    
T  36995730 tgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgcctt 36995803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 37000387 - 37000454
Alignment:
Q  243 gctttcaaagctgcttcacaagcagctttgtgtttcctcccattaagatgggaattcaatgttttctc 310  Q
    ||||||||||||  |||||||  ||| ||||||||||||||||| || ||||||||||| ||||||||    
T  37000387 gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctc 37000454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 385
Target Start/End: Original strand, 36986218 - 36986340
Alignment:
Q  263 agcagctttgtgtttcctcccattaagatgggaattcaatgttttctcacatggaactgttaccaaacataaagaacatgcccactctttctgcacttcc 362  Q
    ||||||| |||||||| | ||| | || |||||||||||  |||||||||  |    ||||||||||||||||| ||| | |||||||||||||||||||    
T  36986218 agcagctctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttcc 36986317  T
Q  363 ttttgcgcaatagtagaactctg 385  Q
    || || | |  ||||||||||||    
T  36986318 ttctgtgtagaagtagaactctg 36986340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 36978817 - 36978900
Alignment:
Q  157 ctccattctcaacatcagaatttaacctattgctaaaattcttctgtttcacctcctctttggccttgtagatttttagcttct 240  Q
    ||||| ||| |||||  ||||| ||| ||||||||| || ||||||||||||||||||||||| ||  ||||| || |||||||    
T  36978817 ctccactcttaacattggaattgaacttattgctaacatccttctgtttcacctcctctttggactgatagatgttcagcttct 36978900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University