View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1993_low_4 (Length: 405)
Name: NF1993_low_4
Description: NF1993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1993_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 26099696 - 26099314
Alignment:
| Q |
17 |
gtagttaataaaatctgctttgcttttccaaaataacttagaattgcttgattactttgttacgagtcctaccgtaccaaattaagttcaatgaatttag |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
26099696 |
gtagttaataaaatctgctttgctttaccaaaataacttagaattgcttgattactttgttacgagtcctaccataccaaattaggttcaatgaatttag |
26099597 |
T |
|
| Q |
117 |
aaactttatactcaaatgatgctaatcaccatctcaaatcgtgctcagagttctgcccggttaagtgataccggggagctacattccgaagcattcccca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099596 |
aaactttatactcaaatgatgctaatcaccatctcaaatcgtgctcagagttctgccctgttaagtgataccggggagctacattccgaagcattcccca |
26099497 |
T |
|
| Q |
217 |
caaaatctatatttaccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaagatacattctaaagtttactacttcccaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26099496 |
caaaatctatatttaccatccccaccaaaatctggcagaaatgtgtcggagcctcagtcaagattccgaagctacattctaaagtttactacttcccaca |
26099397 |
T |
|
| Q |
317 |
aggtcacttaaaacatgtctcaactcacacaatcatcacccttcttcattgttatcctccttccatttcctgcatcatctcag |
399 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099396 |
aggtcacttaaaacatgtctcccctcacacaatcatcacccttcttcattgttatcctccttccatttcctgcatcatctcag |
26099314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
| Q |
273 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
322 |
Q |
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||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
25224814 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25224863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
| Q |
273 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
322 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||||| |||||| |
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| T |
25288970 |
gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca |
25289019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
| Q |
273 |
gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca |
322 |
Q |
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||||||||||| ||||| || |||||||||||||||||||||| |||||| |
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| T |
25728434 |
gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca |
25728385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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